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Keywords

E-value & bit score (BLAST), Dynamic programming (Needleman–Wunsch, Smith–Waterman),
Substitution matrices (PAM, BLOSUM), Multiple sequence alignment (ClustalΩ, MUSCLE, MAFFT),
Position-specific scoring matrix (PSSM), Hidden Markov Models (HMMER, profiles),
Gene prediction (AUGUSTUS, GeneMark, Prodigal), Genome mapping/assembly (contigs, scaffolds, N50), RNA-seq pipeline (alignment, normalization, DESeq2/edgeR), Multiple testing control (FDR, Benjamini–Hochberg), Phylogenetics (NJ, ML, bootstrapping), Protein domains & families (Pfam, InterPro), Protein structure prediction (homology modeling; fold prediction),Structure quality (Ramachandran plot, RMSD), Molecular docking (scoring functions, pose ranking),QSAR/ML basics (features, cross-validation, ROC-AUC), Pathway analysis (KEGG/Reactome, enrichment), Network biology (PPI networks, centrality), Biomarkers (diagnostic vs prognostic; validation),ADMET & Rule of Five (drug-likeness), ICAR 6th Deans Syllabus

Bioinformatics and Biocomputation - Volume 07

Language: English | Imprint: NIPA

Hardback

ISBN: 9789367557310
Pages: 150 | Length: 152 mm | Breadth: 9.5 mm | Height: 229 mm | Weight: 370 GSM
Print Book Price: 290.00 USD (Get 10% OFF)
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EBook

EISBN: 9789367550021
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eChapter

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<p style="text-align:justify">Developed in accordance with the <strong>ICAR Sixth Deans&#39; Committee curriculum and learning outcomes</strong>, this book transforms the multidisciplinary field of Bioinformatics into concise, high-yield, and examination-focused learning material for undergraduate and postgraduate students of Agriculture, Biotechnology, Life Sciences, and allied disciplines. The text bridges biological concepts with computational approaches through a clear, systematic, and student-friendly presentation.</p> <p style="text-align:justify">The book compresses the core domains of bioinformatics&mdash;from biological databases and information retrieval to genome analysis, sequence alignment, phylogenetics, profile-based methods, gene prediction, transcriptomics, protein structure analysis, systems biology, and computational drug discovery&mdash;into easy-to-understand notes supported by diagrams, flowcharts, and comparative tables.</p> <p style="text-align:justify">Each chapter begins with crisp definitions, fundamental principles, and important formulae, followed by algorithms, parameter settings, and result interpretation strategies. Side-by-side tool comparison sheets provide quick reference to major bioinformatics resources and software, including their inputs, key parameters, outputs, applications, and limitations.</p> <p style="text-align:justify">Worked examples and numericals explain concepts such as E-values and log-odds scores, substitution matrices, multiple testing corrections (FDR), cross-validation statistics, docking scores, and QSAR parameters. Special emphasis is placed on understanding parameter selection, avoiding common interpretation errors, and developing analytical reasoning skills essential for competitive examinations and research applications.</p> <p style="text-align:justify"><strong>Key Features</strong><br /> &bull; Strictly aligned with the <strong>ICAR Sixth Deans&#39; Committee syllabus and course outcomes</strong><br /> &bull; Crisp definitions, concept notes, formulae, and diagram-based explanations<br /> &bull; Flowcharts for major bioinformatics pipelines including RNA-seq, variant calling, homology modelling, and virtual screening<br /> &bull; Comparative &ldquo;Choose-the-Tool&rdquo; tables for rapid revision and decision-making<br /> &bull; Parameter boxes covering gap penalties, word size, HMM thresholds, differential expression cut-offs, and validation criteria<br /> &bull; Interpretation cues addressing E-value misconceptions, overfitting in QSAR studies, and docking pose validation<br /> &bull; Solved numericals on E-values, substitution matrices, FDR calculations, cross-validation metrics, docking scores, and QSAR statistics<br /> &bull; Unit-wise MCQs (single-best answer and numerical), Assertion&ndash;Reason, Match-the-Pairs, and mini caselets with answer keys and explanations<br /> &bull; Useful for university examinations, ICAR and State Agricultural University examinations, ASRB-NET (fundamentals), DBT-BET/JRF, and other competitive examinations in bioinformatics and computational biology</p> <p style="text-align:justify">By integrating computational principles with biological applications and examination-oriented presentation, this book serves as a comprehensive learning and revision companion for students pursuing Bioinformatics under the <strong>ICAR Sixth Deans&#39; Committee framework</strong>, while simultaneously providing a strong foundation for advanced studies and research in computational biology, genomics, and systems biology.</p>
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