eChapters

Plant diseases, in spite of the various measures adopted to control them, continue to be a major cause of crop losses. At times these losses have been so heavy that they have caused severe famines. Diseases are caused by a wide variety of organisms such as fungi, bacteria, viruses, mycoplasma and nematodes. The diseases may be partially or completely controlled by chemical, cultural and genetic methods. When no single method is effective in controlling a disease, integrated control constituting a combination of the three methods of disease control (chemical, cultural, genetic) may be effective. If host resistance alone is sufficient to check a disease, then it is to be preferred to other methods because it is the least expensive, has no adverse environmental effects and involves no specific action on the part of the farmer, even when only partial, genetic resistance supplements chemical control and makes it more effective in comparison with chemical control on a completely susceptible cultivar.

Many plant diseases have been successfully controlled by exploiting genetic resistance especially where differentiation in the pathogen with respect to resistance genes in the host is lacking. In some cases, even when pathotype differentiation occurs in the pathogen, genetic resistance in combination with other methods has given adequate control. Breeding for resistance to highly variable air-borne fungal pathogens has claimed much time and effort of plant breeders and success has often been transient. The reasons for the shortlived success have become clear from research during the last quarter of a century.

Vegetable crops are highly susceptible to biotic stresses incited by different diseasecausing micro-organisms (fungi, bacteria, phytoplasma, virus), insect pests, nematodes, arachnids and weeds. In contrast to abiotic stresses caused by the environmental factors such as drought, heat, soil salinity, alkalinity, etc., biotic stress-causing agents directly deprive their host of its nutrients leading to reduced plant vigour and, in extreme cases, death of the host plant. In vegetable crops, different biotic stresses are the major cause of pre- and post-harvest losses.
Indiscriminate use of chemicals for the control of diseases, insect pests and nematodes has several disadvantages particularly, increasing cost involved in chemical control, residual toxicity of the chemicals (fungicides, antibiotics, insecticides) in food chain and development of resistance against pathogens and insect pests to different chemicals. Management of diseases and insect pests involve the use of resistant varieties and integration of cultural and chemical control measures.

High temperature stress
Abiotic stresses either individually or in combination cause morphological, physiological, biochemical and molecular changes that adversely affect plant growth and ultimately yield. The major forms of abiotic stress plants are exposed to in nature are heat, drought, cold and salinity. Of these abiotic stresses, heat stress has an independent mode of action on the physiology and metabolism of plant cells. High temperatures above optimal have generally damaging effects on plant development which has led to the prediction that Global warming have a negative effect on plant growth. High temperature regimes may cause severe yield reduction leading to even famine. High temperature stress has wide range of effects on plant in terms of physiology, biochemistry and gene regulation pathways. The susceptibility to high temperatures in plants varies with the stage of plant development and genotype.
Mechanisms of heat tolerance
Heat tolerance is generally defined as the ability of the plant to grow and produce economic yield under high temperature conditions. Several plant physiological parameters and mechanisms that contribute to heat tolerance in the field include:

In practical agriculture, resistance represents the ability of a certain variety to produce larger crop of good quality than an ordinary variety at the same level of insect population. During the 19^th Century, the French wine industry survived a major set-back largely due to the use of resistant root stocks imported from America and which still maintain their resistance levels against the beetle pest (Painter, 1951). Another important example of resistant variety is the U-4 variety of cotton possessing high level of resistance to the jassid, Emposasca spp. (Parnell, 1925). The excessive use of pesticide on oilseed crops needs to be minimized owing to several reasons: (i) most of the pesticides are lipophilic and are likely to be carried in the oil (ii) in a few cases like Brassica, leaves and inflorescence are consumed as saag (pot herb), (iii) the oilseed crops provide the raw material for the vanaspati industry, cosmetics, etc., (iv) many of the oilseeds and oils are directly consumed without further processing, and (v) the oil cakes are used as cattle feed. Thus there is an urgent need to exploit the non-pesticidal methods of pest control, among which the use of resistant varieties assumes a great significance. The details of each oilseed crops are given below:

Crop varieties are domesticated since civilization, and their continued cultivation depends on continuous breeding programmes for insect, disease and other stress resistance. World wide, insects and their associated problems cause threat to crop production. Many crops suffer from insects, which may be in the form of direct damage by feeding or indirectly by the transmission of diseases by insects as vectors. Until now, chemical crop protection is seen as the major way to combat these problems. However, insects develop resistance to the insecticides very quickly. Apart from controlling pest insects, insecticides also affect beneficial insects, such as predators and parasitoids of the pest insect, pollinators, and harmless fauna, thus upsetting ecological balance results in many unwanted problems. Hence, the best strategy is to prevent the problems that occur. The most economical and environmental friendly way of controlling the insect pests of crops would be through host-plant resistance (HPR). Resistant plants help farmers to grow crops with minimal use of chemicals. This will lead to a reduction in the cost of production, thereby increasing the profit margin for farmers and thus importance of breeding for pest resistance is manifested.

Genetic resistance is the more efficient and the more environmentally friendly way to protect crops against phytonematodes. Nematode management is complex, hence, the prevention of an initial phytonematode infestation in pathogen-free areas is of fundamental importance. However, after the entry of the nematode into an area, it is virtually impossible to eradicate because it is a soil-dwelling organism. In this regard, the genetic resistance of plants to nematodes is considered one of the most efficient and economically feasible methods to prevent production losses (Matsuo et?al?, 2012). Thus, breeding for nematode resistance is essential in crop management to obtain a high yield and stable production.

The immediate and long-term objective of modern plant breeding in all countries irrespective of the state of their advancement is increasing the availability of food to meet the calorie-protein requirement of their people. In the past, breeders have concentrated their efforts on increasing the yield of the important crop species. Better adaptation to local environmental conditions, high production and better resistance to the major pests and diseases have been among the priority goals of genetic plant improvement. Yielding ability and stability undoubtedly deserve high priority but enough attention also needs to be paid to improving nutritional characteristics of the plant produce for their maximum utilisation. Awareness of nutritional requirements and the optimal characteristics of crop products to be utilised as food and feed, therefore, becomes an important parameter of breeding effort.

The main source of food in the developing world is cereals which provides 45 to 85 per cent of the total calories and 50 to 80 per cent of the total protein requirements. The consumption of animal proteins, which are nutritionally well balanced, is low and costly and beyond the reach of the low income groups. On the other hand, plant proteins are cheaper to produce and easier to store and transport. All these factors go in favour of increasing the quantity and quality of cereal proteins in order to improve the dietary and nutritional status of the masses in the developing world.

Proteins are made up of about twenty different amino acids. For man, eight of these amino acids, valine, methionine, leucine, isoleucine, threonine, phenylalanine, lysine and tryptophan, are essential (EAA) for constituting a well balanced diet. In impioving the grain quality of cereals consideration should, therefore, be given apart from the content of carbohydrates, fats, minerals and vitamins in the grains, to improving the protein content as also the amino acid composition of the protein.

I. Introduction
Abiotic stress refers to the detrimental impact of environmental factors such as temperature, light intensity, humidity, and salinity on plants, leading to damage or hindered growth. Unlike biotic stresses caused by living organisms, these abiotic stresses arise from physical conditions like extreme temperatures, droughts, floods, high winds, air pollution, soil erosion, and other natural phenomena. The severity of these stressors varies depending on the plant species and their ability to adapt to changing surroundings. Gaining insights into how plants react to abiotic stress is essential for devising strategies to enhance crop productivity in unfavorable conditions (Huang et al., 2014; Zhu, 2016).
A. Definition and types of abiotic stress
Abiotic stress pertains to the adverse effects of non-living elements on organisms within a particular habitat. These stressors surpass the usual scope of environmental fluctuations and have the potential to damage both plants and animals. In contrast to biotic stress triggered by living disturbances, abiotic stress factors are intangible and encompass factors such as intense sunlight, extreme temperatures, wind, and various other natural phenomena.

Introduction
Biological stress factors such as bacteria, fungi, viruses, and pests can lead to losses in yield and quality before and after harvest. An estimated10 to 23 percent loss is caused by fungal pathogens, along with an additional 10 to 20 percent post-harvest loss. Unlike animals, plants do not possess a highly developed immune system or mobile immune cells. They possess highly sophisticated defense mechanisms based on their structural, chemical, and protein composition. The defense responses of plants to different pathogens are influenced by factors such as the stage of plant development, the pathogenicity of the pathogen, and the environmental conditions. Recognizing the importance of genes that resist biotic stressors, it becomes clear that they are invaluable natural resources for sustaining agricultural productivity and minimizing crop losses36. Any physiological abnormality or significant disruption in the average health of a plant is considered a disease. Living agents, like fungi and bacteria, and environmental factors such as nutrient deficiency, drought, and lack of oxygen, excessive temperature, ultraviolet radiation, and pollution can all contribute to disease development. Plants have developed diverse constitutive and inducible defenses to safeguard themselves from harm. Disease resistance is decreased pathogen growth on or within the plant11. It indicates a lower disease occurrence in one genotype than the susceptible variety and is a relative characteristic. Typically, the reproduction rate is significantly decreased, which restricts disease transmission. Plants have varying levels of resistance to different pathogens, with some being more susceptible to specific pathogens while being resistant to others. This resistance is often specific to particular species or strains of pathogens.

When conditions in the plant growing environment are less than the optimum, the plants experience stress which is broadly termed as abiotic stress. Major abiotic stresses impacting crop yield significantly are as follows (Grover et al., 2004; Acquaah, 2007):

Drought: This is the environmental condition caused by lack of adequate rainfall. This is also termed as water stress or desiccation stress. Effects of drought on crop plants are complex and variable and are greatly accentuated by a number of interacting factors. The onset of drought in general has been observed to reduce germination, emergence, hypocotyl length, water uptake and the mobilization of dry matter reserves even at the early growth stages. Drought stress causes a marked reduction in leaf area. Soil moisture availability at the seed germination, anthesis and at post-anthesis growth stages determines as to what extent production potential of crops would be expected in drought-prone situations.

The yield losses in field crops may be attributed to inadequate water availability at the critical growth stages. Crops therefore differ in their susceptibility of growth stages to water stress. Stress exposed plants immediately lower down relative water content (RWC) of their leaves, leaf water potential, osmotic potential. Turgor pressure may also be decreased unless plants have finally adapted to drought by opening of stomata again and improving the water potential. It has been reported that low leaf expansion rate at the early stage and accelerated leaf senescence accompanied by mortality of older leaves at later stage decreases total leaf green area.

Plant abiotic stresses are external and nonliving factors that have harmful effects on plants. A non-living factor must exert influence on the normal range of environmental variation to adversely and significantly affect the plant performance or the physiology of the organism. Abiotic stresses are the most harmful factors affecting the growth and productivity of crops worldwide, resulting in a yield reduction ranging from 10% to 100%. They are most harmful when occurring together with other abiotic stresses and their effect in yield will only worsen with the climatic changes experienced now and expected to be more severe in the future.

29.1 Introduction

An environmental factor that interferes with the complete expression of genotypic potential of a crop is called stress. The stresses may be biotic (pathogens, insect-pests, etc.) or abiotic. The main abiotic stresses are drought, mineral deficiency/toxicity and heat or cold. The losses due to abiotic stresses can be minimized by:

Crop management: The degree of stress can be reduced by suitable agronomic/soil management practices, e.g., irrigation to relieve drought stress, soil amendments to reduce salinity.

Development of resistant cultivars: This offers the cheapest, easiest to apply and most eco-friendly approach to reduce losses due to any stress.

Indirect breeding: Evaluation of materials under stress often helps in identification of a resistant line that may become an important commercial cultivar.

???????Direct breeding: It is deliberate breeding of materials for stress resistance. When a genetically variable material is grown under the stress environment, selection can be based on survival, yield and other traits contributing to stress resistance.

Biotic stresses include diseases and insect pests which cause serious damage to the crop plants and ultimately yield loss. Biotic stresses can be listed as follows:

• Diseases caused by pathogens which include fungi, bacteria, and viruses
• Insects
• Nematodes
• Parasitic weeds

Another category of stresses are called as abiotic stresses which are caused by environmental factors as:

• Water stresses (water logging, drought)

28.1 Introduction

The stress that is caused by biological agents or factors such as diseases, insect-pests and parasitic weeds is called biotic stress. The term disease can be broken into two words: “dis” (means negative, reverse or opposite) and “ease” (means comfort, or freedom from pain or discomfort). Hence, plant disease can be defined as any harmful alteration from the normal functioning of physiological processes. Diseases may be bacterial, fungal or viral. A wide range of insects infests various crop plants. The extent of damage caused to crop plants by various organisms is usually in the order fungi > bacteria > viruses > nematodes = insects. But the relative importance of these organisms varies to a great deal in different crops. Breeding of cultivars resistant to diseases and/or insect-pests is the cheapest, safest and most dependable means of limiting the losses due to them. Resistant cultivars form an important component of integrated management of diseases and insect-pests.

28.2 Breeding for Resistance to Biotic Stresses-Diseases

Agrios (1970) has defined disease as: “Disease is a series of invisible and visible responses of plant cells and tissues to a pathogenic microorganism or an environmental factor that result in adverse changes in form, function or integrity of plant and may lead to partial impairment or death of the plant or its parts.” The organism causing disease is called pathogen, while the plant affected by the disease is called host.

The principles underlying breeding for resistance to diseases are much the same as for other characters, except for one important difference, i.e., the diseases caused by pathogens are the product of interaction between two genetic systems, that of the host and that of the parasite. Both systems are capable of variation and evolution and affect the interaction between host and pathogen. Here the breeder is required to deal with the heritable traits of both the host plant and the pathogens invading it.

Introduction

Worldwide damage due to insect pest attack accounts for 15 per cent crop losses, despite the use of insecticides which represents over US $100 billion (Krattiger, 1997). The annual cost of insect control itself amounts to US $8 billion, thus warranting immediate and economical control measures. The crop varieties developed in the past 30 years were high yielders, but unfortunately had poor storage characteristics and were highly susceptible to pest damage. Insect-pests are capable of evolving to biotypes that can adapt to new situations, for instance they overcome the effect of toxic materials or bypass natural or artificial plant resistance, which further confounds the problem (Roush and McKenzie, 1987). Under these circumstances, provision of food to the rapidly expanding population has always been a challenge facing mankind. This problem is more acute in the tropics and sub-tropics, where the climate provides a highly conducive environment for a wide range of insects and necessitates massive efforts to suppress the population densities of different pests in order to achieve an adequate supply of food. In developing countries, the problem of competition from insect-pests is further complicated with a rapid annual increase in human population (2.5-3.0 percentage) against a meager 1.0 per cent increase in food production. In order to feed the ever expanding population, crop protection plays a vital and integral role in the present day agricultural production to minimize yield losses. Currently, the crop protection practice in agricultural systems relies exclusively on the use of agrochemicals, although a few specific cases do exist, where inherent varietal resistance and biological control have been successfully employed. The exclusive use of chemical pesticides not only results in rapid build-up of resistance to such compounds, but their non-selectivity affects the balance between pests and natural predators, and is generally in favour of pests (Metcalf, 1986).

Introduction

Within the very small portion of the plant kingdom that includes the world’s crop plants, the legumes are a large group second to the cereals as sources of human food. Legumes belong to the family leguminosae with a group of bacteria, Rhizobium, which is able to utilize atmospheric nitrogen. This symbiosis which occurs in the root hairs may be the key to the success of legumes worldwide distribution. The family leguminosae includes about 18,000 species, characterized by their fruits, which are pods, by their (usually) alternate, pinnate or trifoliate leaves (Cobley and Steele, 1976). The diversity in the family ranges from hardwood trees of the tropical rain forests to the herbs of temperate pastures.

Vegetables are considered protective foods and play an important role in human nutrition. These help to combat malnutrition and also diversify diets with variety of colours. The compounds imparting various colors to the vegetables are important antioxidants that also help to combat degenerative diseases like cancer. Over the years, vegetable sector has made an appreciable progress in terms of production and productivity and emerged as the better option to diversify agriculture, generate employment and enhance farmers’ incomes. The worldwide production of vegetables has doubled over the past quarter century and the value of global trade in vegetables now exceeds that of cereals.

Globally, India ranked second in vegetable production and contributed 15.8 and 14% to global vegetable area and production, respectively. The production of vegetables in India is estimated to be 212.91 million tonnes in the year 2022-23 compared to 209.14 million tonnes in the year 2021-22. India ranked first in production of okra in the world (73% of world production) and second in brinjal (27.55%), cabbage (13%) and tomato (11%). The major vegetable growing states in India are West Bengal (14.1%), Uttar Pradesh (11.4%), Bihar (9.3%), Madhya Pradesh (8.0%) and Gujarat (7.1%). Vegetables are especially important crops for farmers with small holdings because an appreciably higher income per hectare can be generated by growing vegetables than from conventional staple crops (Genova et al, 2006). However, vegetables are generally considered more vulnerable than staple crops to stressful environmental conditions including extremes of temperatures, drought, salinity, alkalinity, water logging, mineral nutrient excesses and deficiency (Chinnusamy et al, 2005). These environmental stresses are likely to be exacerbated by the prevalent climatic changes in many parts of the world.
Among environmental factors, soil salinity stress is one of the main factor reducing production and productivity of vegetables in arid and semi-arid regions where irrigation water has excessive salt and annual rainfall is low. In India, about 6.73 million ha of land (~2.1% area of the country) is salt affected, out of which 2.96 million ha is saline and 3.77 million ha is sodic (Arora & Sharma 2017). About 75% of salt-affected areas exist in four states, i.e., Gujarat, Maharashtra, West Bengal, and Rajasthan (Mandal et al., 2018).

INTRODUCTION

India has emerged as second highest producer of potato in the world, after China. The crop has been identified as the most important crop for ensuring food security for the developing countries, and a highly nutritious food providing more calories, vitamins and nutrients per unit area of cropped land than any other staple food. The crop has witnessed phenomenal increase over the seven decades of potato research in India. For a crop which was introduced in the country only in the early 17^th century, and was neither adapted, nor its staple food, the remarkable increase in potato production and productivity is an exceptional achievement of breeding this temperate introduction into the present day potato cultivars.

BREEDING REQUIREMENTS

The table potatoes introduced in India were adapted to long photoperiods of up to 14 hours and crop durations of 140-180 days allowing them to be cultivated only in the hilly regions of India. The unique and diverse agro-climatic condition of the country, comprising of contrasting conditions in the Indian plains, where potato could be grown in the winter months necessitated breeding efforts to develop the potato varieties suitable for the sub-tropical plains and the other potato growing regions. The winters in sub-tropical plains have short photoperiod (with about 10-11 hours sunshine) and the crop duration is limited to 90-100 days because of short and mild winter. Further constraints on photosynthetic activity due to early morning fog, posing a strong limitation on tuber bulking. This is followed immediately by a long hot summer period, which coincides with the post-harvest storage period of potato, creating challenging storage problems. The rapid degeneration of seed stocks, with concomitant decrease in yield due to accumulation of viral diseases and tuber storage and utilization in hot and humid climate thus needed to be addressed, in priority. Besides, these southern, north Bengal and Sikkim hills and the plateau offer agro climatic area specific problems related to the biotic and abiotic stresses prevalent in the regions. Moreover, the unique reproductive biology of the plant made it possible to flower only under the long day conditions of the hills, where hybridization was initiated at Kufri (Shimla), Himachal Pradesh. However, during the initial years, it was not possible to evaluate the breeding progenies in the warmer sub-tropical plains due to the quick degeneration of hill bred progenies and dormancy of hill potatoes.

Horticulture, which includes fruits and vegetables, plantation crops, spices, flowers, and medicinal and aromatic plants, has proved beyond doubt its potentiality for gainful diversification. One of the significant developments is that, horticulture has moved from rural confine to commercial production. Recently horticulture has emerged as one of the best option of diversification for effective land use planning and to achieve inclusive growth. The achievement in the development of horticulture through crop improvement is laudable, as the sector now contributes more than 30 percent to GDP of agriculture and has maintained the growth rate of more than 5 percent during the last two decades.