eChapters

ABSTRACT

Production of cardamom in India has been greatly affected by Cardamom mosaic virus (CdMV). The conventional breeding program to develop resistance is a lengthy process. An alternative approach is to develop transgenic cardamom through introduction and expression of viral sequences in the plant. The coat protein (CP) gene of all the CdMV isolates have been cloned in pGEMT vector and sequenced. Sequence comparison studies of the eight isolates of CdMV in their CP and 3’UTR showed that, Kursupara isolate is highly variable from the rest of the isolates (Jacob et al., 2003). Hence the present study was undertaken to introduce the Kursupara CP gene of CdMV into cardamom plants in order to develop pathogen-derived resistance in cardamom. The CP gene of the Kursupara isolate of the virus was amplified with and without the 3’untranslated region (3’UTR) from the viral clone. These PCR products were cloned into the pXcmkn12 vector and sub cloned in to a plant expression vector (pAHC17) at the BamHI site, under maize ubiquitin promoter. Work is in progress towards the biolistic transformation of cardamom with these constructs.

ABSTRACT

The cry1A genes of Bacillus thuringiensis (Bt) are widely used to engineer lepidopteran insect resistance in crop plants including horticultural crops. Continuous exposure of a single kind of Bt toxin can lead to resistance development in insect pest. Due to the difference in structure and unique insecticidal mechanism, cry2A genes are promising candidates for management of resistance development. Since India is rich in biodiversity and genetic resources, indigenous Bt strains are valuable tool for identification of novel cry genes. The present study describes the cloning of cry2Ab from a new indigenous strain of Bt, 14RI. The presence of cry2Ab gene in Bt strain 14RI was confirmed by PCR with primers specific to its internal region. Primers corresponding to the flaking region of cry2Ab were used for amplification of cry2Ab orf from the Bt strain 14RI. The amplified cry2Ab orf was first cloned into the T/A cloning vector, and then fused to the downstream of the cry2Aa promoter along with its orf1 and orf2 in the Bt shuttle vector pHT1301. Acrystalliferous Bt strain 4Q7 has been transformed with recombinant pHT1301 to express the cry2Ab of Bt strain 14RI.

ABSTRACT

The present study was conducted to screen fungal isolates for chitinolytic activity and to clone full-length endochitinase gene from fungus. Among the ten isolates tested (Trichoderma harzianum 1, 2, 3, Trichoderma koningii, Trichoderma virens, Trichoderma viride, Aspergillus oryzae Metarshizium verrucasia, Bauveria bassiana, Nomuraea releyi), Trichoderma koningii showed higest colloidal chitin hydrolysis when screened in Mandels and Reese (1969) salts supplemented with colloidal chitin as the sole carbon source followed by Aspergillus oryzae. Nomuraea releyi showed least chitinolytic activity. Other isolates were on par with each other. The use of diagnostic primers showed specific amplification of 260 bp in Trichoderma harzianum isolates 1,2 and3, Trichoderma koningii and Trichoderma virens, which confirmed presence of endochitinase gene.

Attempts were made to clone full-length endochitinase gene from isolates showing chitinolytic activity. A unique amplicon of 1.7Kb from Trichoderma virens was cloned into linear pTZ57R/T vector with T over hangs. The confirmation of clones was made through blue/white colony assay, plasmid mini-preparation and PCR amplification of these plasmids, sequencing and BLAST search at NCBI. Among the clones confirmed, pSAV804 was sequenced that showed 98% homology with other reported endochitinase genes from Trichoderma spp at DNA and protein level. 85.7% of the protein is conserved. The ORF of the sequence comprises of 822 bases, which deduces 274 amino acids. The position of primer sequence in the insert and BLAST results confirmed the reverse orientation in the vector. The endochitinase gene now needs to clone into the expression and plant expression vectors for further studies.

Steps for Cloning

Prepare DNA.

Select restriction enzymes for your insert and vector, and determine the appropriate reaction buffers.

Combine the following in a microfuge tube (30 µL total volume):
2 µg DNA
1 µL Each Restriction Enzyme
3 µL 10x Buffer
3 µL 10x BSA
x µL H₂O (to bring total volume to 30 µL)

Introduction

Only after the discovery of restriction endonucleases it became possible to digest any DNA molecule at a specific site and any two pieces of DNA could be joined together with the help of another modifying enzyme, the DNA ligase. Consequently, a new branch of molecular biology, namely genetic engineering has been developed. With the help of genetic engineering techniques, it is now possible to identify and isolate the gene (for a protein of interest and insert it into the genome of another organism with the help of a suitable vehicle. The foreign gene thus cloned, can be amplified to produce millions of its copies. The insert gene can be expressed by the host to synthesize the gene product. The technique can also be used for understanding the regulation of expression of the cloned gene. The possibilities are endless and probably sky is the only limit. In this chapter we will briefly discuss the basic principles and protocol involved in gene cloning.

In avian species following diseases are caused by Clostridium bacteria.

1. Ulcerative enteritis
2. Necrotic enteritis
3. Gangrenous Dermatitis
4. Botulism
5. Yolk sac infections.

Clostridia infections are not common in birds and are not a significant source of infection for man and animals.

The genus Clostridium belongs to the family Clostridiaceae. The genus name was originated from the Greek word ‘kloster’ means spindle, referring to their individual rod shape. Clostridia are gram positive, large, sporulating anaerobic rods (except C. piliforme which is gram negative). At present, there are more than 200 numbers of species under the genus Clostridium. Among them, 15 species can produce potent toxins and are considered as pathogenic for animals and human. The animal pathogenic Clostridia can be classified as neurotoxic, histotoxic and enteric.

The genus Clostridium consists of gram positive, spore forming anaerobic bacilli. The spores are wider than the bacillary bodies, giving the bacillus a swollen appearance, resembling a spindle. Hence, the name clostridium (Kloster- meaning spindle) was given.
Systematics
Domain : Bacteria
Phylum : Firmicutes
Class : Clostridia
Order : Clostridiales
Family : Clostridiaceae
Genus : Clostridium
The clostridia can be divided into four major groups according to the kind of
disease they produce. They are as follows.

Clouds play very important role on weather and climate. The formation of clouds takes place when water condenses in the sky. Clouds are visible accumulation of tiny water droplets and ice crystals in the Earth’s atmosphere. The moisture is always present in the atmosphere though it may not be visible. Clouds form when air becomes cooler until the water vapour present in it condenses to liquid form. The condensation over oceans occurs around solid particles like salt, dust, smoke etc. suspended in the atmosphere. The type of clouds depends upon temperature and wind. The clouds are classified based on physical appearance and the height at which clouds are formed (Fig. 7.1).

Cloud computing and Edge AI provide complementary infrastructure for intelligent livestock management. Cloud platforms offer scalable storage, centralized analytics, model training and integration of data from sensors, cameras, automated feeders and farm-information systems. Edge AI processes information close to the farm, reducing latency, bandwidth consumption and response time. This chapter explains their architectures, workflows and applications in dairy, poultry, swine and small-ruminant production. Uses include disease detection, estrus prediction, behavioural monitoring, feeding and environmental control. Hybrid cloud-edge systems balance centralized intelligence with local autonomy. Challenges involving connectivity, interoperability, cybersecurity, cost, model reliability and ethical animal surveillance are also critically examined.

Abstract

Cloud computing is becoming a technology mature enough for its use in genome research experiments. The use of large datasets, its highly demanding algorithms and the need for sudden computational resources, make large-scale sequencing experiments an attractive test-case for cloud computing. So far I have seen cloud computing demonstrated using R. However, it remains to be seen a rigorous comparison of its performance using a BLAST search and its ability to cope with ever-increasing databases and open source frameworks such as bioperl or bioconductor.

Introduction

Information Technology (I.T.) with its multi advantageous services has influenced the working of every sector whether it is education, industries, livelihood, agriculture, and other sectors viz government, business, health, employment, environment and security etc. Consequently, taking the benefit of I.T.,  most of the organizations have automated their systems to perform their routine activities in a better way as well as to offer more improved services.

Clouds, those ever-present features of our sky, are more than just aesthetically pleasing; they are fundamental components of earth’s weather and climate systems. This chapter, “cloud formation and classification,” will embark on a journey to understand the fascinating processes that lead to their creation and the systematic ways in which they are categorized.
We will begin by exploring the essential ingredients for cloud formation: the presence of water vapor in the atmosphere, the availability of condensation or ice nuclei, and the crucial mechanism of air cooling. We will delve into how rising air parcels cool adiabatically, reaching saturation and allowing water vapor to condense or deposit into the myriad forms we recognize as clouds.
Following the understanding of their genesis, we will navigate the internationally recognized system of cloud classification. This system, primarily based on a cloud’s altitude, appearance, and the processes that formed it, provides a common language for meteorologists and observers worldwide. We will learn to identify the main cloud types – high, mid-level, low, and vertically developing – and their associated characteristics, from the wispy cirrus to the towering cumulonimbus.
Furthermore, we will touch upon the significance of different cloud types in indicating current weather conditions and forecasting future weather. The appearance and evolution of clouds can offer valuable clues about atmospheric stability, moisture content, and the likelihood of precipitation.
By the end of this chapter, you will gain a comprehensive understanding of how clouds form the diverse array of cloud types that grace our skies, and their importance in the broader context of atmospheric science. Let’s unlock the secrets held within these visible masses of water and ice suspended in our atmosphere.

Clouds, those ever-present features of our sky, are more than just aesthetically pleasing; they are fundamental components of Earth’s weather and climate systems. This chapter, “Cloud Formation and Classification,” will embark on a journey to understand the fascinating processes that lead to their creation and the systematic ways in which they are categorized. The essential ingredients for cloud formation are the presence of water vapor in the atmosphere, the availability of condensation or ice nuclei, and the crucial mechanism of air cooling. We will look into how rising air parcels cool adiabatically, reaching saturation and allowing water vapor to condense or deposit into the myriad forms we recognize as clouds. Following the understanding of their genesis, we will navigate the internationally recognized system of cloud classification. This system, primarily based on a cloud’s altitude, appearance, and the processes that formed it, provides a common language for meteorologists and observers worldwide. We will learn to identify the main cloud types – high, mid-level, low, and vertically developing – and their associated characteristics, from the wispy cirrus to the towering cumulonimbus. Furthermore, we will touch upon the significance of different cloud types in indicating current weather conditions and forecasting future weather. The appearance and evolution of clouds can offer valuable clues about atmospheric stability, moisture content, and the likelihood of precipitation. In the end of the chapter, you will gain a comprehensive understanding of how clouds form, the diverse array of cloud types that grace our skies, and their importance in the broader context of atmospheric science. Let’s unlock the secrets held within these visible masses of water and ice suspended in our atmosphere.
5.1 Clouds
Clouds are visible masses of tiny water droplets or ice crystals suspended in the Earth’s atmosphere. These droplets or crystals are so small and light that

Clouds are the most important form of suspended water droplets caused by condensation. The World Meteorological Organisation defined cloud as a visible aggregate of minute particles of water or ice or both, in the free air. This aggregate may include larger particles of water or ice and particles such as those present in fumes, smoke or dust. The typical size of these water droplets and ice crystals range from less than 1 µm to 50 µm. When surrounded by billions of other droplets or crystals, they become visible as clouds. In the atmosphere sufficient moisture is required to allow condensation to take place. Then, moisture needs a suitable surface upon which it can condense. In free air, condensation begins on hygroscopic nuclei such as aerosols. These are microscopic particles and include dust, smoke, salts and chemical compounds. Nuclei range in size from 0.001 µm radius to over 10 µm. On an average, oceanic air contains one million condensation nuclei per litre and land air holds some 5 or 6 million. On hygroscopic particles such as sea salts, condensation can begin before the air is saturated. Supersaturation in clouds rarely exceeds one per cent. On average, clouds contain only four per cent of the total water in the atmosphere at any one time. Almost all clouds exist in the troposphere, although the tops of some severe thunderstorms occasionally extend to the stratosphere. Clouds move along with the wind and remain stationary in calm winds. They grow vertically and horizontally, depending on the temperature of the cloud and its ambient temperature. They may dissipate or precipitate. Under favourable atmospheric conditions, they burst and fall as rain. Clouds complete the following functions.

Clouds, those ever-present features of our sky, are more than just aesthetically pleasing; they are fundamental components of earth‘s weather and climatesystems. This chapter, „cloud formation and classification,“ will embark on a journey to understand the fascinating processes that lead to their creation and the systematic ways in which they are categorized.
We will begin by exploring the essential ingredients for cloud formation: the presence of water vapor in the atmosphere, the availability of condensation or ice nuclei, and the crucial mechanism of air cooling. We will delve into how rising air parcels cool adiabatically, reaching saturation and allowing water vapor to condense or deposit into the myriad forms we recognize as clouds. Following the understanding of their genesis, we will navigate the internationally recognized system of cloud classification. This system, primarily based on a cloud’s altitude, appearance, and the processes that formed it, provides a common language for meteorologists and observers worldwide. We will learn to identify the main cloud types – high, mid-level, low, and vertically developing – and their associated characteristics, from the wispy cirrus to the towering cumulonimbus.
Furthermore, we will touch upon the significance of different cloud types in indicating current weather conditions and forecasting future weather. The appearance and evolution of clouds can offer valuable clues about atmospheric stability, moisture content, and the likelihood of precipitation. By the end of this chapter, you will gain a comprehensive understanding of how clouds form the diverse array of cloud types that grace our skies, and their importance in the broader context of atmospheric science. Let’s unlock the secrets held within these visible masses of water and ice suspended in our atmosphere.

Cloud usually consists of very small droplets of water which cannot fall appreciably below the cloud base without evaporation. In this condition clouds are stable. Rain drops are about a million times heavier than cloud drops and rain develops only if the cloud droplets grow by some mechanism. Cloud Seeding mechanism depends on the difference in vapour pressure over ice and super cooled cloud, water evaporates of the droplets and migrate to the ice crystal, which grows and begins to fall increasing their growth rate by coalescence with other droplets and eventually melting and falling as rain drops. Presence of ice nuclei determines whether ice crystals form in a supercoold cloud or not. Ice crystals form on naturally occurring nuclei at temperatures of – 10⁰ to 30⁰ C. At warmer temperatures, either the efficient ice-forming nuclei are often deficient in the atmosphere or the cloud may occur with tops supercooled but not to an extent which activates the ice nuclei available. It should be possible to initiate precipitation by introducing ice crystals or by supplying artificial nuclei.

Clouds are visible mass of little drops of water or frozen crystals suspended in the atmosphere above the surface of the earth. The World Meteorological Organisation defined cloud as a visible aggregate of minute particles of water or ice or both, in the free air. This aggregate may include larger particles of water or ice and particles such as those present in fumes, smoke or dust.

Clouds are the most important form of suspended water droplets caused by condensation. The typical size of these water droplets and ice crystals range from less than 1 µm to 50 µm. When surrounded by billions of other droplets or crystals, they become visible as clouds. In the atmosphere sufficient moisture is required to allow condensation to take place. Then, moisture needs a suitable surface upon which it can condense. In free air, condensation begins on hygroscopic nuclei such as aerosols. These are microscopic particles and include dust, smoke, salts and chemical compounds. Nuclei range in size from 0.001 µm radius to over 10 µm. On an average, oceanic air contains one million condensation nuclei per litre and land air holds some 5 or 6 millions. On hygroscopic particles such as sea salts, condensation can begin before the air is saturated. Supersaturation in clouds rarely exceeds one per cent. On average, clouds contain only four per cent of the total water in the atmosphere at any one time. Almost all clouds exist in the troposphere, although the tops of some severe thunderstorms occasionally extend to the stratosphere. Clouds move along with the wind and remain stationary in calm winds. They grow vertically and horizontally, depending on the temperature of the cloud and its ambient temperature. They may dissipate or precipitate. Under favourable atmospheric conditions, they burst and fall as rain. Clouds are essential to the earth-atmosphere system. They complete the following functions.

Cloud has been defined as a visible aggregation of minute water droplets and / or ice particles in the air, usually above the ground level.

CLASSIFICATION OF CLOUDS

Though confusion apparently arises from the number of kinds or species, the genera seems reasonably clear out, if we are able to recognize their main characteristics.

Clouds are usually classified according to their height and appearance. For convenience, we list them in descending order. High clouds, middle clouds and low clouds are some forms do not fit in any of these categories. But fortunately their particular characteristics make them easily identifiable as vertical development clouds. We must exercise some caution in studying on height. There is some seasonal as well as latitudinal variation and there is some overlapping from time to time. However, the appearance of clouds is quite distinctive for each height category.