eChapters

Several attempts have been made to detect the biopotentials of microorganisms with reference to their ability to produce various enzymes with a view to use them in industrial processes and bioremediation applications. Enzymes are increasingly used as a new route to synthesize food ingredients such as flavours, emulsifiers, sweeteners, food additives, nutrients. With the advent of genetic engineering, a wide range of enzymes has become available on a large scale and this has increased the scope of enzyme technology.

MICROBIAL ENZYMES: Enzymes are proteinaceous complex organic catalysts of biological origin and vital constituents of cells. Microbes produce a variety of enzymes, intracellular and extracellular enzymes. Most of the microbial enzymes produced for commercial usage are extra cellular enzymes. Extracellular enzymes are secreted outside the cell and hydrolyze polymeric substances. Amylases and proteases are enzymes of economic importance. At present over 60 enzymes are in commercial use, of which three-quarters are hydrolytic enzymes. Commercial production of microbial enzymes utilizes a variety of fungi, yeasts and bacteria. The composition of the medium, genetic stability of the microbial strain and physical and chemical factors of fermentation influence the production of a particular enzyme.

Enzymes catalyze a variety of reactions during processing and preservation of food products and form a large group of processing aids. Food industry utilizes enzymes in the production of bakery items, dairy products, fruits and vegetables juices and products, tenderization of meat, modification of oils and fats, flavour production and preservation of food products. Enzymes have also found use in the manufacture of ingredients like glucose, high fructose syrup, citric acid, colour and flavour constituents.

The study of soil microorganisms involves various complicacies when compared with those of plants or animals aboveground. The complicated heterogeneous environment existing in soil and the varied growth behaviour of microbial populations in soil have necessitated the development of special techniques to study the microbes and their metabolic diversity, individually and holistically without disturbing their natural habitat. With the gradual improvement in microscopy since its discovery in 1667 and also with the greater understanding of the nature of soil microbes and their properties in relation to total ecosystem function, the concept of studying microbes in isolation has enormously changed. Microscopes have helped in magnifying these, otherwise invisible, minute creatures within the limits of naked eyes.

SINGLE CELL PROTEIN (SCP) AND PROTEIN DEFICIENCY

Protein is an essential component of diet. The greatest single problem in the world today is global food protein shortage. Having adequate quantity of food is only one side of the picture, but the most important aspect is the supply of balanced and nutritious food. All efforts are being made to increase the food production through modern methods of farming. But very little attention is being paid towards protein requirements and production. Approximately half of world population suffers from the protein deficiency disease called ‘Kwashiorkor’ and children with poor protein are victims of this disease.

Usually, cereals have low protein values while protein rich pulses are not available in desired quantities due to poor yields and high costs. The good quality protein available in fish, meat, poultry, and eggs is not available due to poor economic condition as well as varied dietary habits. With the current system of production, agriculture cannot be relied upon to feed an ever increasing world population. Hence there is an urgent need to find other protein sources. The best potential is seen in microbial protein or single cell protein (SCP), a new source of protein independent of agriculture.

DEFINITION: The dried cells of microorganisms such as bacteria, fungi, yeasts, algae that are grown in large scale culture systems as proteins for human or animal consumption are collectively known as "single cell proteins".

2.1 Introduction 
The world is encountering a severe power and environmental crisis. Adopting sustainable progress is the best means to protect our environment and maximise the use of available resources. The urgent issues, encompassing diverse types of pollution and carbon emissions, highlight the necessity to shift towards renewable energy sources. This shift is essential for diminishing our dependence on fossil fuels, addressing the on-going challenges regarding climate change, and confronting the exhaustion of current energy reserves. Furthermore, mitigating water pollution is an essential component of ensuring ecological sustainability [1,2]. Water supplies are rapidly being contaminated due to diverse contaminants including heavy metals, and harmful chemicals. While industrialization is critical for societal growth, it is critical to recognise the negative environmental consequences caused by numerous processes that emit hazardous substances. Improper disposal of untreated wastewater can negatively impact ecology and biodiversity [3]. As a result, it is critical to use environmentally friendly and sustainable treatment methods that adhere to green development principles. This will bolster industrialization efforts while upholding water pollution safeguards for recovery and reuse. Given the prevailing energy crisis, traditional wastewater treatment facilities have become financially unsustainable due to their high energy consumption. Traditional wastewater treatment is both costly and demands substantial energy resources. Furthermore, these approaches fall short of efficiently eradicating recalcitrant organic waste, heavy metals, and other persistent contaminants. Moreover, many of these treatment processes require regeneration. Microbial fuel cell (MFC) technology has emerged as an ecofriendly treatment option capable of effectively eliminating stubborn organic pollutants and heavy metals over the long term. Microbial fuel cells are chosen over other current treatment methods because to their reduced energy needs and lower chemical usage [4,5]. In addition to lowering energy usage, MFCs possess the ability to produce ample bioenergy, which can help alleviate the energy shortage. This provides a cleaner alternative for generating renewable energy in favour of sustainable development and environmental protection as depicted in Figure 2.1.

Introduction

Hippocrate, an ancient physician, a great thinker and also often referred as father of medicine, for the first time conceive the idea nearly 2,500 years ago that a disease is caused due to natural factors such as environmental factors, diet, and living habits. He advocated the secret of healthy living in healthy food in his famous quote “Let food be thy medicine and medicine be thy food”. But unfortunately, this wisdom about food has faded with the time and we became dependent on synthetic medicines and drugs for even life style disorders. In the last century, research advancement in the field of food science and nutrition established food not only as a source of nutrition but also a source of active food components that aid specific functions and rejuvenated the Hippocrates concept. According to the Department of Health and Human Services, USA, daily diet of a person, plays a crucial role in 5 of 10 diseases which are the leading causes of death, such as diabetes (noninsulin dependent or type 2), stroke, coronary heart disease (CHD), specific type of cancer, and atherosclerosis. In the mid-1980s, term “functional food” was introduce in Japan and defined as food that contain active components either from plant or animal origin and provide physiological benefits in addition to the basic nutritional needs.

Genetics is the study of what genes are, how they carry information, how their information is expressed, and how they are replicated and passed to subsequent generations or other organisms.

DNA in cells exists as a double-stranded helix; the two strands are held together by hydrogen bonds between specific nitrogenous base pairs: A-T and C-G.

A gene is a segment of DNA, a sequence of nucleotides, that code for a functional product, usually a protein.

When a gene is expressed, DNA is transcribed to produce RNA; mRNA is then translated into proteins. This is also referred as Central Dogma of Life. The DNA in a cell is replicated before the cell divides, so each daughter cell receives the same genetic information.

The term growth for bacteria and other microorganism usually refers to changes in the total population rather than an increase in size or mass of an individual organism. As the mechanism of conservation and dissipation of heat generated during metabolism lacks in bacteria, the enzyme system in bacteria gets directly influenced by temperature. The purpose of studying the bacterial growth curve is a) to become familiar with the population growth dynamics of bacterial culture and b) to plot a growth curve and determine the generation time of bacterial culture.

A number of methods are now available for measuring bacterial growth. Some important ones are

1)By colony counting or cell counting

2)By weighing the cells

3)By cell activity (turbidity method)

Abstract

Discovery of the agricultural utility of microbes during the later part of the eighteenth century, led to the formulation and utilization of superior microbial strains as biofertilizers, for a wide variety of crops and growing conditions across the world. Though microbial inoculants have been in usage for almost two centuries, they are yet to capture the collective imagination of farmers across the globe, which is essential to meet the larger objective of reducing chemical input usage in cropping systems. One probable reason for this is the existence of large growing tracts that are subject to various abiotic stresses of atmospheric and edaphic origin, which limit the proliferation and efficiency of the microbial strains that are commonly used in inoculant production.  This is obvious, since unlike chemical fertilizers, microbial cells being living systems need to grow and thrive in the introduced eco-systems in order to achieve the desired effects of inoculation. But unfortunately microbial inoculant technology has largely adopted the one size-fit all mindset, which had led to failures of microbial inoculants especially in abiotically stressed growing environments. In such a scenario it would be wise to adopt a location or region specific approach for the selection of superior and locally adapted microbial strains for inoculant production.

Introduction

The increasing concern about the long-term productivity of agro ecosystems has emphasized the need to develop a management strategy that maintains and protects the soil resources. This is directly related to the maintenance of the level of soil organic matter and nitrogen status, which are the critical components of soil productivity. These parameters can change over time due to crop management practices such as cultivation, crop rotation, residue management or fertilization which, in turn, can influence the long-term sustainability of ecosystem. Application of chemical fertilizer is one of the most expensive inputs in agriculture. About 65% of the applied nitrogenous fertilizer is lost from the plant–soil system through gaseous emissions, runoff, erosion and leaching which causes greenhouse effects and nitrate pollution of surface and ground water (Rejesus and Hornbaker 1999). Similarly, P applied in soil is rapidly fixed and results in low P availability for plant production. In this context, the deployment of microbial biofertilizers promise increasing soil nutrient availability in integrated nutrient management system.

The increase in population and global industrialization has led to environmental pollution, which is a significant threat to the health of the ecological system. Different measures are recommended to remediate polluted areas effectively. The applications of nanotechnology in medicine, cosmetics, sports, textiles, and pharmaceuticals have increased over the years. Another approach to remediate the adverse effects of pollutants on the environment is by utilizing nanotechnology for contaminant remediation. Biogenic nanoparticles are tiny particles produced by biological entities such as fungi, bacteria, yeast, and algae. These biogenic nanoparticles are efficient in removing pollutants like heavy metals, pharmaceutical waste, dyes, and hydrocarbon waste. 

1.    Introduction    174
2.    The Thermodynamic and Mechanistic basis of Cellular Metabolism    174

    2.1.      Adenosine triphosphate, 175
    2.2.    Coenzyme A, 176
    2.3.    Modes of ATP synthesis, 177

3.      Components of Electron Transport Chain    181

    3.1.    Electron carriers in ETC, 182
    3.2.    Complex I - NADH dehydrogenase (NADH coenzyme Q reductase), 185
    3.3.    Complex II - Succinate - coenzyme Q reductase, 187
    3.4.    Complex III - Coenzyme Q - cytochrome c reductase, 187
    3.5.    Complex IV - Cytochrome c oxidase, 188
    3.6.    ATP synthese, 188

The essential nutrients and their function in microbial cells

1. INTRODUCTION

Flavour is a distinctive property of a substance affecting the gustatory sense. It may be defined as “The sum of those characteristics of any material taken in the mouth, perceived principally by the senses of taste and smell, and interpreted by the brain.” Flavour perception is a complex process which requires the particles to be mixed with saliva and salivary enzymes to promote the release of flavour. Flavour molecules are very diverse in nature. More than 5000 compounds in food have been identified as flavour components which can be detected at very low concentration and are thus, used in products at very low levels. Hexenols and hexenals, characteristic of green taste of fresh fruits and vegetables, can be perceived at a concentration of about 1 part per million (ppm). Naturally occuring flavour compounds are present at a very low concentration ranging from parts per trillions (ppt) to parts per millions (ppm) level. Majority of these compounds are volatile, with boiling points in the range of 20-300 °C. Most of these compounds are lipophilic and possess a great diversity of chemical group and structure with molecular weight ranging between 50-250 g/mol.

Flavour and fragrance compounds are a part of expanding industry with an estimated cost of nearly $27 billion. These comprise of diverse molecules with unique structures and functional groups that contribute to varied aroma and flavour, ranging from floral to fruity notes. The processing operations modify the equilibrium between the different components in raw food that might weaken the original flavour, which require subsequent supplementation. These flavour supplements can be natural or chemically synthesized. Of all the available flavour compounds, around 80% are produced by chemical synthesis whose use is limited due to formation of racemic mixtures and lack of substrate specificity. The growing awareness of consumers towards chemicals supplemented to food has led to the development of the flavouring compounds of biological origin referred to as natural flavours or bioflavours. The first major source of flavour compounds was primarily from plants. Identification of microbes producing vital food flavourants paved the way for alternative low cost, efficient and flexible method for the commercial production of flavour compounds.

Abstract
 
Opencast mining destroys the original land ecosystem and microbial community due to mining and stockpiling of mine rejects on adjoining land, which is a matter of great environmental concern. Mining creates formation of wastelands, formation of gullies, ravines, overburdens, reduced water infiltration and increased runoff. Reclamation of mined out areas is often difficult due to its chemical, physical and biological traits. Absence of topsoil is the most common feature of the mine spoils dumps. Arbuscular mycorrhizal fungi (AMF), the synonym of VAM fungi, are important microbes of soil that form symbiotic association with most of the terrestrial plants on the earth. Observations led to use of legume microsymbionts as biological substitutes for fertilizers. AMF diversity increases with species diversity of plants as the potential number of association increases. Dominant arbuscular mycorrhizal fungi can prevent the invasion of non-mycorrhizal plants on land where they have established symbiosis and promote their mycorrhizal host.

Introduction

Bacteria are very minute and colourless in their natural environment and are difficult to be seen under compound microscope. To view their exact morphology, various kinds of stains are used. Stains are of three main types.

Acidic stains: These are those stains in which charge on dye ion is negative. e.g. India Ink, Eosin etc.

Basic stains: These are those stains in which charge on dye ion is positive. e.g. Methylene blue, Crystal violet etc,

Neutral stains: These are the salts of dye acid in dye base. e.g. Eosinate of Methylene blue.

Abstract

Anaerobic sulfur compound reduction processes make use of sulfur, thiosulfate, trithionate, tetrathionate, and sulfite during the reduction process. Complete reduction of these sulfur compounds leads to production of H₂S. Isolation of sulfur compound reducers requires a suitable electron donor and one of the sulfur compound as a sole electron acceptor during the reduction process carried out in anaerobic conditions. Anaerobic sulfur, thiosulfate and tetrathionate reductases identified to date are molybdopterin binding oxidoreductases that extract out electron during the reduction process. The electron transport chain during the reduction process involves cytochromes and menaquinones. Dissimilatory sulfite reductases include conventional siroheme dissimilatory sulfite reductase and the nonconventional sulfite reductases including ASR sulfite reductase, F₄₂₀ dependent sulfite reductase and the MccA sulfite reductase. Anaerobic sulfur compound reduction process are almost ubiquitous in nature and are important part of the biogeochemical cycle. They occurs in aquatic systems, are found in extreme environments such as hydrothermal vents, acid mine drainage sites and are also found in important human and animal pathogens.

Abstract

Microbiological synthesis of nanoparticles has emerged as rapidly developing research area in nanotechnology across the globe with various biological entities being employed in production of nanoparticles constantly forming an impute alternative for conventional methods. Simple prokaryotes to complex eukaryotic organisms including higher plants are used for the fabrication of nanoparticles. In the present article, the synthesis of important plant nutrients like Mg, Zn, Ag, Au, Ti, P and Fe nanoparticles from different fungal species, their characterization and application potential of nanonutrients in agriculture is elaborately discussed.

Introduction

A toxin (Greek: ôïîéêüí, toxikon, lit. (poison) for use on arrows) is a poisonous substance produced by living cells or organisms that is active at very low concentrations. Toxins can be small molecules, peptides, or proteins and are capable of causing disease on contact or absorption with body tissues by interacting with biological macromolecules such as enzymes or cellular receptors. Toxins vary greatly in their severity, ranging from usually minor and acute (as in a bee sting) to almost immediately deadly (as in botulinum toxin)

Soil microorganisms immobilize and mineralize various elements to satisfy their growth requirements. The subsequent turnover of microbial biomass also releases several mineral elements. The elements may be released as a result of organic matter decomposition (e.g. during the process of mineralization, ammonification, etc.) or through biological weathering. Other transformations may involve oxidation and reduction of various inorganic ions and compounds which are mostly catalyzed by chemoautotrophic bacteria during oxidation of ammonium, nitrite, sulphur, iron, etc. Such oxidations may also release energy for microbial growth.

Introduction

Phosphorus is only second to nitrogen as a mineral nutrient required for plants, animals and microorganisms. It is a major constituent of nucleic acids in all living systems essential in the accumulation and release of energy during cellular metabolism. Phosphorus is found in soil, plants and microorganisms in number of organic and inorganic compounds. It is the second major inorganic nutrient after nitrogen in term of quantitative requirement for both crop plants and microorganisms. This element may be added to soil in the form of chemical fertilizers, or it may be incorporated as leaf litter, plant residues or animal remains. In cultivated soils it is present in abundance (i.e. 1100 kg/ha), but most of which is not available to plants, only 15% of total soil phosphorus is in available form. Thus, phosphorus occupies a critical position both in plant growth and in the biology of soil.

Introduction

In soil, microorganisms influence not only the availability of carbon and nitrogen, which are important constituents of plants, but also of sulfur (S), phosphorus and many other trace elements for plant absorption. Sulphur is found widely distributed and considered as tenth most abundant element in the nature. Sulfur is considered as an essential element for survival of plant and animals and found as gypsum (CaSO₄.2H₂O), pyrite (FeS₂) and other combined form and also in elemental form (S⁰) in the nature. The requirement of sulphur by plant is comparatively less than the primary nutrients, hence sulfur is recognised as ‘secondary’ nutrient. 

The planet earth harbors a total population of 7,530,687,482 (as on 7^th September 2017 at 1345hrs) in which Asia and Africa share 4,486,207,286 and 1,252,251,830, respectively. In majority of the countries in Asia and Africa surveillance programs for detection and source tracking of human health hazard bacteria in foods is scant and in some cases do not exist. Hence, the task is much more complicated especially catering to needs of food, nutritional security and microbial safety of foods of more than 5,738,459,116 or 76.2 % of the total population of the world. The continued occurrence of foodborne illness is not evidence of the failure of our food safety system. In fact, many of our prevention and control efforts have been and continue to be highly effective. In advanced countries like US where food supply is one of the safest in the world, however, significant food borne illness continues do occur. Despite great strides in the area of microbiological food safety, much remains to be done.

Food-borne disease outbreaks are defined as the occurrence of 2 or more cases of a similar illness resulting from ingestion of a common food or observed number of cases of a particular disease exceeds the expected number. These can be confirmed (when at least one causal agent is identified) or suspected (based on clinical and epidemiological information). Although most cases are sporadic, these diseases draw attention to themselves due to outbreaks, thorough investigation of which can help in identifying control measures.Annual burden of foodborne diseases in the WHO South- East Asia Region includes more than: 150 million illness, 175 000 deaths, 12 million DALYs (Source: FERG Report 2010).

4.1 Introduction
At the moment of secretion in the udder, milk is sterile; however, it is contaminated by bacteria before it is extracted from the udder. With the exception of mastitis, the bacteria are generally innocuous and restricted at this juncture. Microorganisms may contaminate the milk further during milking, handling, storage, and other pre-processing activities. The bacteria have the potential to either enhance the quality of milk or cause it to deteriorate. Some of the beneficial bacteria, particularly the lactic acid bacteria, are referred to as probiotics. These probiotics are gaining a more prominent position in nutraceutical dairy and other food products, which provide consumers with health benefits such as the control of diarrhoea, antihypertensive, hypocholesterolemia, immunostimulatory, and anticarcinogenic properties.

4.2 Lactic acid bacteria
This particular group of bacteria is capable of homofermentation, which is the process of fermenting lactose to lactic acid, and heterofermentation, which is the process of generating a high number of end products. They are commonly present in milk and are also used as starter cultures in the production of cultured dairy products, such as yoghurt.

Introduction

Numerous characteristics of food determine its acceptability to consumers and to regulatory officials. Before accepting a food for consumption, it must be attractively presented, must have desirable odour and flavour characteristics and other qualities and must be free from potential pathogens or their toxic products. The ultimate nutritive qualities, flavour and appearance have been preserved and no harmful organisms or substances are present to affect the consumer adversely. If the quality of the product is good, its keeping quality is also likely to be substantial. Conversely, there are more chances of spoilage of an inferior quality food product during storage.

1. Introduction

Fruits and vegetables have been an integral part of man’s diet from immemorial times. Fruits are the portions of plants that bear seeds, while vegetables are the edible components of a plant, including the leaves, stalks, roots, tubers, bulbs, flowers and seeds. These can be eaten raw or cooked. Fruits and vegetables can be preserved for short-term intervals under refrigeration, with or without receiving a minimal treatment like slicing, chopping, shredding or peeling. Fresh produce may also be irradiated or packaged in controlled or modified atmosphere in films for short-term storage. Long-term preservation includes canning, juicing, drying and addition of preservatives. Food contamination with hazardous biological agents remains a worldwide challenge in food safety and nutrition (Kenny 2002; Schlundt 2002; Tauxe et al 1997). Microorganisms form part of the epiphytic flora of fruits and vegetables and many will be present at the time of consumption. Production practices, growth conditions and the location of the edible part during growth (soil, soil surface, aerial part) will in combination with intrinsic, extrinsic, harvesting and processing factors affect their microbial status at the time of consumption. Man-made sources may be directly from farm laborers and from the equipment used for harvesting or storage. The types of microorganisms on fruits and vegetables would also vary with the orchards, vineyards or growing fields. The resident microflora normally subsists on the slight traces of carbohydrates, proteins and inorganic salts that dissolve in the water exuding from or condensing on the epidermis of the host. The numbers of bacteria present will vary depending on seasonal and climatic variation and may range from 104 to 108 per gram. The inner tissues of fruits and vegetables are usually regarded as sterile (Lund 1992). However bacteria can be present in low numbers in the insides of the fruits and vegetables as a result of the uptake of water through certain irrigation or washing procedures.

In the last decade or so, the problem of determining the microbial content and their activities in dairy products has been under close scrutiny. The dairy industries still adopt the dye reduction test because it is cheap, simple and satisfactory. However, other new techniques have been introduced along with some modifications in traditional tests. The microbiological quality must be maintained. To assess the bacterial content and their activities in dairy products, various methods are available for the microbiological testing of milk. The specific tests should be chosen as per the application and other factors like cost etc. On the basis of public health and economic consideration it is necessary to test microbiological quality of milk at a number of points along the chain from producer to consumer which includes - raw milk supply, bulk milk arriving at processors premises, monitoring bulk milk during storage prior to processing and monitoring the procession & the quality control of finished products. The techniques for estimating bacterial numbers in raw material are divided into two categories.

Introduction

In this microbiology report, we delve into the intricate realm of bacterial isolation and identification, exploring the fundamental processes that unlock the mysteries of microbial worlds. From the methods employed for isolating bacterial strains to the intricate techniques of identification, this report aims to provide a comprehensive understanding of the crucial role microbiology plays in unraveling the secrets of these microscopic organisms. Join us on a journey through the principles and applications that form the backbone of bacterial isolation and identification in the fascinating field of microbiology.

This chapter introduces the microbiological characteristics of eggs and egg products, beginning with the egg's natural physical and chemical defenses against microorganisms. It examines routes of contamination, spoilage microorganisms and spoilage patterns, with particular emphasis on Salmonella Enteritidis and its public-health significance. Other pathogens of concern and the distinctive microbiology of processed egg products are also considered. The chapter discusses microbiological testing, indicator organisms, contamination control and predictive microbiology, providing a foundation for designing effective safety systems throughout the egg value chain.

1. Bacteria intoxication - already formed bacteria not live bacteria

2. Bacterial infection consumption of live bacteria

3. Neuro toxin produced by C. botulinum

4. Listeria identified by the serotyping

5. Fishery product have type E, C. botulinum

6. S. aureus produced entiro toxin

7. S. aureus is heat resistant but not active in pasteurization

8. E. coli-0157:H7

9. Salmonella should be below 105/g

10. Septicemia can occur due to the salmonella

11. L. monocytogens should be 10/ g

Microorganism is a collective term for all living organisms, which are not visible to the eye, and occupy an intermediate position between the vegetable and animal kingdoms. They are found every where in the atmosphere, in water and in the soil and, as they break down organic materials, they play a very important role in the cycle of the nature.

There are thousands of species which are important to the life and economic structure of the human race. For example, certain species form simple chemical elements during the break down of dead organic material which plants can use again. They increase soil fertility and crop production which results in more food.

Other species are present, and essential, in animal intestines, helping in the digestion of food.

Some microorganisms are used in many food processes, e.g. dahi, yoghurt, cheese, pickles, beer and wine as well as in the acid production to preserve foods. There are microorganisms that produce toxic substances which kill other organisms, e.g. the mould penicillium which produces the substance penicillin.

Many microorganisms cause diseases in animals and plants with a subsequent reduction in the nation’s food supply, whereas others cause food deterioration such as mouldy foods, tainted foods, etc.

A. Enumeration of Different Microflora of Soil
Introduction
Agriculturally, soil is the region which supports the plant life by providing mechanical support and nutrients required for growth. From the microbiologist view point, soil is one of the most dynamic sites of biological interactions in the nature. Soil is an admixture of five major components viz. organic matter, mineral matter, soil-air, soil water and soil microorganisms/living organisms. The amount/ proposition of these components varies with locality and climate.

The soil organisms are broadly classified in two group’s viz. soil flora and soil fauna, the detailed classification of which is as follows.
1) Soil flora
a) Microflora Bacteria, Fungi, Molds, Yeast, Mushroom, Actinomycetes, Streptomyces, Algae e.g. BGA, Yellow Green algae, Golden brown algae.
b) Macroflora

The basic methods for wastewater sewerage (collection, treatment, and disposal) are as follows:

• Off-site sewerage
• Separate sewerage system
• Combined sewerage system
• On-site sewerage

Many nations have implemented separate sewage systems that transmit sewage and storm water through separate pipelines in order to separate the two. Storm water often does not contribute to a wastewater treatment facility (WWTP). Domestic sewage contains 99.9% or more water. The remaining portion is made up of bacteria

Life on Earth is dependent on microorganisms for many essential services. Microbes are intimate partners in global agriculture by way of mobilization of nutrients, antagonism against pathogens and exploitation of plant- microbe interactions and optimization of plant microbiome allows farmers to apply less chemical fertilizers and pesticides, and improving plant growth and yield for sustainable development.

India has 2.4% of land area of world and 8.1% global species diversity. India has 7500 km long coast line in nine states and three union territories. About 14% of Indian population (17 crores) lives in coastal area. In 10.78 million ha of coastal ecosystem, rice is the major coastal crop. Coastal rice accounts for 15% of total area and production of India. Coconut, cashew, areca nut, spices, plantation and fruit crops are the other important coastal crops. The east coast in four states (Tamil nadu, Andhra Pradesh, Orissa, West Bengal) and one union territory (Pondicherry) has sandy coast and plains with medium to high rainfall (100-250 cm), and hot humid climate. It has marshy lands and mangroves. The west coast in five states (Kerala, Karnataka, Goa, Maharashtra, Gujarat) and two union territories (Diu and Daman, Dadar and Nagarhaeli) has fertile sandy plains with high rainfall (250-300 cm) and hot humid climate suitable for horticulture and plantation crops. Western Ghats near west coast is a hot spot with high biodiversity. ICAR established the Central Coastal Agriculture Research Institute (CCARI) at Goa in 2015 to carry out research on coastal agricultural crops.

Soil salinity in coastal regions is not only a soil type character, but also due to low quality irrigation water. The plant associated microorganisms “Plant microbiome” play a significant role in conferring resistance to soil salinity. The endophytic bacteria- rhizobium, rhizobacteria- azospirillum, azotobacter, phosphobacteria, PGPR bacteria, cyanobacteria, symbiotic fungi- ecto and endo mycorrhiza, alleviate the impact of soil salinity. Minimal microbiome for plants is the key determinant of plant health and productivity. The plant- microbe interactions are of three types: (i) Positive: Beneficial organisms- nitrogen fixers, phosphobacteria, mycorrhiza; (ii) Negative: Harmful organisms - plant pathogens; (iii) Neutral: Transient organisms. Millions of microbes inhabit plants, form complex ecological communities to improve plant growth, crop quality and productivity.

Abstract

Cow and buffalo milk is the major source milk worldwide contributing 81 and 15% of total milk production respectively. However, milk from animals like goat, sheep, camel, donkey, yak etc also contribute to human nutrition and health in different parts of world. These milks are source of staple traditional product and considered as delicacy in parts of Europe, UK, USA etc. The microbiota of raw milk and fermented milks, cheeses, made from raw milk is complex. These microorganisms have immense role in determining quality and safety of the subsequent product made from these milks as they may be responsible in spoilage and reducing shelf life, causing human health issues, also contribute to development of flavor and aroma formation, texture development, ripening cheese. Different factors like host, stage of lactation etc. affect the composition of microbiota present in the milks and methods like cultural and culture independent methods metagenomic analysis have been done to determine the microbial community present in the milk.

Introduction

Non- cow and non-buffalo milks such as milks from goat, sheep, camel, donkey, yaks etc. are one of the important sources of nutrition in different parts of the world. In Mongolia, the highlands of the Afghanistan and Pakistan, Himalayas in India, Nepal, and Bhutan, Tibetan Plateau and in the Mountains China yak milk is the only source of milk. Cheese made from sheep and goat milk are categorized as gourmet food and many times regarded as protected designation of origin (PDO) status. Camel milk is used for medicinal food and donkey milk is suitable for children, aged people due to its hypo allergenic properties. These milks and milk products like cheese, naturally fermented milks and yoghurt are staple traditional foods in different parts of the world.

Domestication of animals was followed by the provision of shelters for protection which also modified the climate to suit the species housed for improving the productivity and reproductive efficiency. Climate is the long term average condition of the meteorological variables in a given region. The climate is divided into macro climate and micro climate. Macro climate is the general large scale climatic conditions of the open atmosphere in a large area. Micro-climate is the climatic conditions directly surrounding the animal or the physical environment in the immediate vicinity of the animal. The environment includes all the combination of conditions under which the animal lives. The immediate variables that affect the production and reproduction of animals are its micro climatic variables. The animals have requirements of their own. The environment influences where and how animal lives. Domestication has resulted in man dictating where and how animal lives. Thus breeds of livestock evolved in temperate regions have been introduced into tropical area with high rainfall, humidity and temperatures. Homeotherms are a group of animals which maintain their deep body temperature essentially constant. All the domestic animals are homeotherms. In the case of an inert body, basic thermodynamic forces establishes an equilibrium in which the body attains the same temperature of the surrounding environment. The same law applies to homeothermic animals also. Therefore, these animals will have to make compensatory physiological and behavioural adjustments to keep a constant deep-body temperature. While digestion of food takes place in the body of animals, a portion of the energy in the feed is converted into heat. This metabolic heat plus the heat gained from the environment through conduction, convection and radiation results in excess heat gain to the animal, which has to be dissipated, if heat balance is to be maintained. For this the animal depends on various physiological and behavioural functions. This balancing act by which a constant normal core temperature is maintained is known as homeothermy. Heat production is regulated by hormonal secretions, changes in muscle tone, shivering and by voluntary muscular activity. Heat loss is controlled by vasodialatation, increasing the cutaneous circulation and evaporative loss. The animal reduces its feed intake as well as production, drink more water. In long term the hair coat becomes lighter with less insulation. The animal will also exhibit postural changes and behavioural adjustments. They will try to increase surface area, reduce physical activity and seek shade.

A farm microclimate refers to the specific climatic conditions of a small, localized area within a farm. These conditions can differ significantly from the broader regional climate due to various natural and man-made factors. Understanding and managing microclimates is crucial for optimizing crop growth, animal welfare, and overall farm productivity. Modern commercial dairy production requires a special approach to the microclimate on the farm. High quality milk and animal health depend on the conditions of their keeping. At the same time, farm for dairy production for the most part do not have the means to control and manage the microclimate, in contrast to poultry farm. When organizing the correct process of controlling the microclimate, a prerequisite is the presence of an automated system for collecting data. Generally animals adapt to a wide range of weather conditions although their growth and productivity varies with weather conditions. Buffaloes and cows form the main component in dairy industry. The extent to which these animals can adapt to different weather conditions is given below: Successful management of buffalo rearing will be incomplete without wellplanned and adequate housing facilities (Fig.10.1).
Improper planning in the arrangement of animal housing may result in management problems, increase in disease incidence, additional labour charges and hence decrease in the profit of the farmer. During erection of a house for dairy buffaloes, care should be taken to provide comfortable accommodation for individual animals. It is important to ensure:
• Proper sanitation
• Durability
• Abundant supply of clean water
• Arrangements for the production of clean milk under convenient and
economic conditions.
Buffaloes may be successfully housed under a wide variety of conditions, ranging from close confinement to little restrictions except at milking time. However, two types of farms are in general use.

Change in weather affects growth and development of plants. The extent of these effects depends upon the range or severity of change of weather. It is very much possible to change the weather in relatively small area to reap better harvest. Micro weather modification is defined as, “The manipulation of weather elements at increasing or decreasing the duration, intensity, quality etc., for desired effects at microlevel of crop under investigation”.

The climate near the ground can be managed partly by influencing the moisture status and temperature of the upper soil layers, e.g. by mulching and partly by action above the ground e.g. by shading or use of wind breaks.

There is an increased use of Glass houses and poly houses in commercial agriculture. The glass houses and poly houses provide a controlled environment for plants throughout the year. Some of the aspects of related to the advantages of Glass houses and poly houses are highlighted in the following text:
9.1. Glass houses
Glass houses are also referred as greenhouses. The glass prevents harmful ultraviolet radiations. The glass is transparent to solar radiations of wavelengths up to 300 nm and does not allow long-wave radiations to pass through it (Fig.9.1). Therefore, the Glass houses maintain higher temperature and high relative humidity during daytime as well as nighttime and offer the following advantages:
9.1.1. Controlled Environment: Glass houses facilitate regulation of temperature,
humidity, and light intensity, creating optimum environment for growing various plant species. This is especially beneficial for tropical and sub-tropical plants that require specific conditions to grow and survive.
9.1.2. Protection from Pests and Diseases: The enclosed glass house protects
plants from pests and diseases. The glass house also protects the plants from harsh weather conditions thereby minimizing risk of infestations and environmental stresses. Fig. 9.1: Microclimate management in Glass house
9.1.3. Extended Growing Season: By maintaining stable climate, glass houses
enable cultivation of plants that may not survive outdoors in certain climates thereby extending the growing season for sensitive species.
9.1.4. Research and Conservation: Botanical gardens often use glass houses for
research purposes, studying plant growth, genetics and breeding. The glass houses will also serve as a means for conserving rare or endangered plant species by providing stable environment for propagation. The advantage of glass houses is that the structure has long life span.
9.2. Poly houses
The poly houses are constructed using polythene material. The poly houses protect the plants from wind, cold weather, hail storms, extreme temperatures, insects and pests. The polythene house farming is a popular greenhouse technology due to its low cost of construction and maintenance. Generally, heat accumulation (70 to 75 per cent of solar energy) takes place inside the polyhouse. Solar radiation is allowed to pass through the polythene material and the long wave radiation cannot escape through polythene. The benefits of poly houses are:

There is growing demand for increasing fruit production as fruits are considered to be healthy, nutritious and easy to digest. Fruits are natural foods and have export potential as well as provide opportunities for increasing employment by establishing fruit processing industries. Some of the fruits can be grown around the year where as some fruits are of seasonal in nature. Usually, the fruit cultivation is undertaken by establishing orchards. In case of orchards, wrong decisions in planting may result in huge loss and therefore right method of planting is the key factor for establishing orchards.
The fruit crops are of three types depending on the adoptability to the climate of the region and are grouped as
• tropical fruits
• sub-tropical fruits
• temperate fruits
The microclimate of the orchards depends upon
• height of the plants/trees
• horizontal spread
• canopy architecture
• spacing/plant density
• age of plantation
• seasonal weather
15.1. Tropical Fruits
The tropical fruits require higher temperature throughout the year. The crops do not require low temperature for breaking dormancy and for flowering. The plants are ever green and grow throughout the year. There plants are well adopted to regions where the minimum temperatures are more than 10°C and very sensitive to frost. There are grown in tropical regions between 23°N to 23°S latitudes. The optimum maximum temperature for growth and development ranges from 30 to 37°C.
15.2. Sub-Tropical Fruits
The sub-tropical fruits perform better between temperate and tropical climates as the plant requires both high and low temperatures. Some of the fruit crops are green and some of those are deciduous. The temperate fruit crops are very sensitive to frost. The sub-tropical fruit plants break dormancy of flower buds

Microclimate under irrigated conditions and dryland conditions can differ significantly due to variations in water availability, which influences several environmental parameters such as temperature, humidity, soil moisture, and vegetation cover. The crops are grown both under irrigated and dryland / rainfed situations. The major difference between irrigated and dryland conditions is availability of water. In irrigated areas, the crops are regularly provided with water through irrigation at regular intervals. Under dryland situations, the water availability to the crops depends upon the rainfall and/or stored soil moisture. Under irrigated situations, there are two different possibilities as indicated below:
• vast stretch of irrigated areas
• isolated pockets of irrigated areas in predominantly dry areas. In dryland areas the following possibilities exist:
• humid and moist sub-humid areas where predominantly rice based cropping systems are adopted during rainy season
• per-humid areas where plantation crops and rice grown during rainy season.
• dry sub-humid areas with rice based cropping systems in low lands and finger millet, maize based cropping systems in upland areas
• semi-arid regions where kharif crops are grown during rainy season.
• rabi-crops grown under conserved moisture conditions during post rainy season.
• arid regions where pearl millet based cropping system are practiced during rainy season.
• hill agriculture
The microclimatic conditions are likely to vary between irrigated and rainfed conditions due to different agro-ecological settings. The comparative analyses of microclimatic variation under both conditions are given below:

Modifying microclimates in agriculture involves altering the local climate conditions surrounding crops or plants to create a more favorable environment for growth. This can be achieved through various techniques when the crops are subjected to weather related stresses.
14.1. To Mitigate Moisture Stress during Droughts
When the crops are under moisture stress, the principles involved are conservation of soil moisture and reduce the evapotranspiration from crops. The moisture conservation can be achieved by suppressing soil evaporation using mulches (Fig. 14.1). The evapotranspiration can be reduced using antitranspirants. Some antitranspirents close the stomata of the leaves to reduce evapotranspiration. Some anti-transpirants increase the reflectance of radiation from the crops, thereby reducing heat load on crops. When crops are grown under irrigation in isolated patches, micro shelter belts can be provided across the predominant wind direction to reduce the increased evapotranspiration from advection. Advection is phenomena of horizontal transport of heat due to strong hot and dry winds.

Modifying microclimates in agriculture involves altering the local climate conditions surrounding crops or plants to create a more favorable environment for growth. This can be achieved through various techniques when the crops are subjected to weather related stresses.
14.1. To Mitigate Moisture Stress during Droughts
When the crops are under moisture stress, the principles involved are conservation of soil moisture and reduce the evapotranspiration from crops. The moisture conservation can be achieved by suppressing soil evaporation using mulches (Fig. 14.1). The evapotranspiration can be reduced using anti transpirants. These are chemicals sprayed on crops. Some antitranspirents close the stomata of the leaves to reduce evapotranspiration. Some chemicals increase the reflectance of radiation from the crops, thereby reducing heat load on crops. When crops are grown under irrigation in isolated patches, micro shelter belts can be provided across the predominant wind direction to reduce the increased evapotranspiration from advection. Advection is phenomena of horizontal transport of heat due to strong hot and dry winds.

1. INTRODUCTION

Many food components are encapsulated and stabilized by nature inside plant cells, but, with the growth in use of functional ingredients and product fortification with vitamins, antioxidants and nature-identical synthetic compounds, there is a need to stabilize and protect these ingredients from the rigours of processing and degradation during storage.

Many food products whose development was thought to be technically unfeasible are possible today because of the wide availability of encapsulated ingredients. Such ingredients are products of a process that totally envelops the ingredient in a coating or ‘capsule’ thereby conferring many useful and otherwise unusual properties to the original ingredients.

Encapsulation is a technique that is applied to preserve and/or protect numerous ingredients. In the flavour industry, the encapsulation process is used chiefly to convert liquid flavour materials to free-flowing, dried powdered products. In a broad sense, encapsulation technology includes the coating of minute particles of ingredients (e.g., acidulants, fats, and flavours) as well as whole ingredients (raisins, nuts, and confectionery products) that may be accomplished by microencapsulation and macro-coating techniques, respectively.

Micronutrient deficiency

Micronutrient deficiencies are the cause for widespread health problems, especially in developing countries. The deficiencies in vitamin A, iron, and iodine have been identified as the greatest concern, as they affect over one third of the world’s population (WHO, 1995). In addition, these micronutrients interact with each other, i.e., synergistic effects between iodine deficiency disorder (IDD) and iron deficiency anemia (IDA), or between vitamin A deficiency (VAD) and IDA to deepen their negative impacts (Lonnerdal, 2004; Lynch, 1997; Zimmermann et al., 2004). Deficiencies typically coexist in children in developing countries (Zimmermann et al., 2000).

70% of people in India do not consume enough micronutrients such as vitamins and minerals. About 70% of pre-school children suffer from anaemia caused by iron deficiency and 57% of preschool children have sub–clinical Vitamin A deficiency. Neural Tube Defects (NTDs) are the most common congenital malformation with an incidence that varies between 0.5-8/1000 births. It is estimated that 50-70% of these birth defects are preventable. One of the major causes is deficiency of folic acid. Thus, micronutrient deficiency also known as “hidden hunger”, is a serious health risk. Unfortunately, those who are economically disadvantaged do not have access to safe and nutritious food. Others either do not consume a balanced diet or lack variety in the diet because of which they do not get adequate micronutrients. Often, there is considerable loss of nutrients during the processing of food.

Introduction The Indian culinary world may have just recently embraced the concept of edible flowers, but they have been a part of traditional Indian cuisines since the beginning. Flowers have been used in human diets and gourmet preparations for thousands of years (Fernandes et al., 2020). However, due to increased consumer knowledge about the effects of nutrition on human health, there is a growing trend in utilizing flowers for edible purposes (Chatzopoulou et al., 2020). Edible flowers were used as a relish and flavour enhancer in many savoury and sweet meals in ancient Rome and Greece. In China’s ancient texts and classics, the words and phrases regarding edible blossoms were also recorded by Zhao et al. (2017). Edible flowers come in a wide variety of colors and cooking ways in different nations. Flowers, such as Osmanthus fragrans Lour and Flos Sophorae, have been employed as basic ingredients in a range of Chinese cuisines (Cunningham, 2015). The people of Rome used flowers in cooking. They make salads using violets and roses and sauces using lavenders. Flowers from pumpkin and squash plants have long been used as ingredients in the United States. People consume aromatic flower buds and unopened blossoms in El Salvador and Honduras. Blossoms are frequently used to garnish food at aristocratic banquets and feasts across Europe. Dandelion (Taraxacum officinale) flowers are also added to beverages and salads in many parts of the world.

Introduction

Encapsulation may be defined as a process to entrap one substance (active agent) within another substance (wall material). The encapsulated substance, except active agent, can be called the core, fill, active, internal or payload phase. The substance that is encapsulating is often called the coating, membrane, shell, capsule, carrier material, external phase, or matrix. In the food industry, encapsulation process can be applied for a variety of reasons. Encapsulation is a useful tool to improve delivery of bioactive molecules (e.g. antioxidants, minerals, vitamins, phytosterols, lutein, fatty acids, lycopene) and living cells  (e.g. probiotics) into foods [1]. In most cases, encapsulation refers to a technology in which the bioactive components are completely enveloped, covered and protected by a physical barrier, without any protrusion of the bioactive components. Also, encapsulation has been defined as a technology of packaging solids, liquids, or gaseous materials in small capsules that release their contents at controlled rates over prolonged periods and under specific conditions. Produced particles usually have diameters of a few nm to a few mm.