eChapters

Abstract

Alleviating plant salt stress and remediating saline soils are of great economic interest. Beneficial microbes such as arbuscular mycorrhizal (AM) fungi, plant growth promoting rhizobacteria (PGPR), etc. are associated with many plant species including trees. These beneficial microbes can cope up with salinity and help the plants to survive in such soils. Diversity status of beneficial microbes from the samples collected from different salt affected areas was investigated by many researchers. They screened and identified the efficient PGPR isolates isolated from saline areas for plant growth hormone (IAA) production and phosphate solubilization. The significance and highlights of the recent research as well as the past understanding of beneficial microbes and their role in reclamation of saline areas is discussed in this paper.

Abstract

Sustainable landscape and forest management are of utmost concern in alleviating climate change. Fungal mutualism is one of the most significant positive biotic interactions responsible for forest structure and longevity. Coastal sand dunes imitate xeric habitats, while mangroves and river floodplains are often marshy. In spite of such extremities, mycorrhizal fungi are prominent component in coastal vegetation. Studies so far revealed that mycorrhizal association in herbaceous plant species is responsible for dune formation, stabilization and serve as potential inoculum in coastal habitats. Mycorrhizal association facilitates plant species to exploit larger volume of soil, supply nutrients (organic nitrogen, phosphorus and minerals), aggregates soil, provides tolerance to salinity stress, relieves from water stress and protects roots from pathogens. Human interference has severe impacts on plant-mycorrhizal mutualism in coastal habitats. Cultivation of exotic tree species and their uncontrolled exploitation further impoverish the habitats. Protection of native herbaceous flora, cultivation of native tree species and introduction of selected indigenous keystone species in disturbed habitats with mycorrhizal mutualism is an appropriate measure of rehabilitation.

Abstract

Since the first oil well drilled successfully in 1859, crude oil has been a serious problem around world, including Indonesia. As a source of all petroleum products, crude oil is very complex component and divided into aliphatic, aromatic, resin and asphaltene. Petroleum products have been used for daily life and created large amounts of pollutants in environment and ecosystems around the globe. The pollutants should be treated by certain method; among them, bioremediation has several advantages to resolve the problem. In 2003, Ministry of Environmental (MoE) – Republic Indonesia was endorsed with a new regulation about biological treatment or bioremediation for crude oil contaminated soil (MoE regulation No. 128/2003). The most important to be noted in bioremediation process is the presence of microbes with certain metabolite capabilities. The degradation rate also can be improved and sustained by ensuring the adequate required factors. This article describes the removal of crude oil by utilization of microbial potentials, factors affecting biodegradation, and how they are applied in Indonesia.

ABSTRACT

Biodiversity is often understood in terms of wide variety of plants, animals and micro-organisms existing on the earth. So far, about 1.75 million species have been identified, mostly small creatures such as insects. According to scientific estimates, there are actually about 13 million species, although range from 3 million to 100 millions. The present article deals with the importance and threats of biodiversity as well as tries to highlights the role of government and non-government sectors in conservation of biodiversity. The initial part of the article indicates the concept of evolution and biodiversity, wherein we have tried to identify the present scenario. We find that a wide range of microbial, plant and animal species are sources of various biological products for human use and welfare. These species are getting lost or extinct due to lack of conservation over a period of long time. Therefore, an effort has been made to highlight the conservation acts and important rules and regulations for protecting and conserving the bio-resources.

ABSTRACT

Microorganisms play a key role for the proper running of the ecosystem. They help in nitrogen fixation, which is unique and most necessary property found only in this group. They help in decompositions, mineralization, nutrient cycling, phosphate solubilization, soil aggregate formation, symbioses, parasitism and many other important works. A great emphasis has been given by many scientists to conserve the microbial diversity. Developing human civilization has a great negative impact not only on the above ground biodiversity but also on the belowground biodiversity. This article is an overview, what important and crucial role nitrogen fixers play for maintaining soil and plant health. Nitrogen fixer not only fixes atmospheric nitrogen but also produces growth promoting hormones which are very important for plant growth. 

Abstract

Mycorrhizal symbiosis is a highly evolved mutually beneficial relationship found between Arbuscular Mycorrhizal Fungi (AMF) and vascular plants. Knowledge of taxonomic and functional diversity of AM fungi is important in understanding the biology and ecology of such a widespread mycorrhizal symbiosis. Classification and identification of AM fungi remains in the formative stages of growth, with all the attendant turmoil. Since Glomus is known to be an important AM genera for providing multifacet benefit to several economically important plants. Hence, in this review article an attempt has been made to describe 120 Glomus species along with the line diagram of 63 Glomus species for their proper identification that can be used as an identification manual for mycorrhizal researchers.

ABSTRACT

Pesticide degradation is the breaking down of toxic pesticides into a non-toxic compounds and, in some cases, down to the original elements from which they were derived. The most common type of degradation is carried out in the soil by microorganisms, especially the fungi and bacteria. Microbial degradation depends not only on the presence of microbes with the appropriate degradative enzymes, but also on a wide range of environmental parameters. Pesticides which are rapidly degraded are called non-persistent while those which resist degradation are termed as recalcitrant (persistent). Microorganisms are able to degrade a large variety of compounds, including pesticides under laboratory conditions. However, methods have yet to be developed to decontaminate the environment from pesticide residues. Continuous efforts are required in this direction, and at present several PGPR capable of degrading pesticides have been isolated from the natural environment. Catabolic genes responsible for the degradation of several xenobiotics, including pesticides, have been identified, isolated, and cloned into various other organisms such as Streptomyces, algae, fungi, etc. In addition, recombinant DNA studies have made it possible to develop DNA probes that are being used to identify microbes from diverse environmental communities with a unique ability to degrade pesticides. Bioremediation treatment still requires more intense research through specific microbial degradation of broad range of organic pollutants. This review describes recent advances in biodegradation of pesticides by addressing the microbes involved in pesticide degradation.

ABSTRACT

The present paper describes application of synergistic action of microalgae viz., Spirulina platensis, Chlorella vulgaris, and Oscillatoria princeps coupled with state-of-the-art microbial biotechnology (that involved strains of Bacillus subtilis, Nitrobacter winogradskyi, Aspergillus flavus, and A. niger) developed by Biotechnology Resource Centre (BRC), Mumbai for treatment of secondary liquid effluents from a gelatine manufacturing industry. The growth of mixed cultures of selected microbial and algal species was measured respectively in terms of Colony Forming Units (CFUs) and Optical density (O.D.) of the culture. The results were indicative of efficient degradation potential of the proteinaceous liquid effluents. Moreover their BOD and COD loads reduced by 30.75 % and 84.10 % respectively after the treatment. Furthermore, the bio-safety of algal biomass cultured in selected effluents as feed supplement was tested on Swiss albino mice (Mus musculus). Mice in treated group didn’t exhibit any observable adverse effect on their growth or on their reproductive performance. In fine, the liquid effluents of gelatine manufacturing industries were polished along with production of probiotic food supplement.

Abstract

Elaboration of mycotoxins by several moulds in different agricultural commodities has been reported to be widespread. The mycotoxins are reported to cause variety of health hazards in different animals including Chicks, cow, horse, rat, Mouse, pig, rabbit, dog, including man. More than 150 species of moulds are reported to elaborate chemically and biologically diverse toxic metabolites. These mycotoxins  are known to induce variety of diseases commonly known as mycotoxicoses.The fungi which elaborate mycotoxins are diverse belonging to different groups of fungi.Mycotoxigenicity of these moulds not only differ among different genera but also among different species.  Some fungi such as Aspergillus flavus, A. terreus, Penicillium griseofulvum, P.expansum, P.nordicum, P.verrucosum, Fusarium acuminatum, F.culmorum, F. graminearum, F.moniliforme, F.oxysporum, F.solani, F. tricinctum and Cheatomium globosum are known to produce more  one  type of mycotoxin which differ in their chemical structure and biological activity.

Abstract

Nematodes are non-segmented worms typically 50 µm in diameter and 1 mm in length. Those few species responsible for plant diseases have received a lot of attention, but far less is known about the majority of the nematode community that plays beneficial roles in soil. Nematode diversity tends to be greatest in ecosystems with the least disturbance. Species of Aphelenchoides, Ditylenchus spp, Helicotylenchus, Meloidogyne spp., Pratylenchus, Scutellonema  and Rotylenchulus are obnoxious plant parasitic nematode beside Heterodera and Globodera. Soil temperature, soil structure, soil pH, soil moisture and soil texture play major role in movement of nematode, infestation and completion of life cycle under abiotic and biotic stresses.

Abstract

Trichoderma species play a vital role in the management of plant diseases in association with different commercial bioformutlations of the fungus. Its role as a successful pollution free environment and friendly mechanism of action has been highly exploited. The diversity of species based on location, type of agri-land and association with different fauna  and flora has been instrumental in large upsurge of biological methods of Plant disease management. Pollution of agri-land soils with chemicals, heavy metals and development of resistance to diseases has become an emerging problem coupled with the high costs of Infrastructure. Thus, the interest in alternative biologically based systems is the need for bioremediation, bioecology and biocontrol with Trichoderma.

ABSTRACT

Decomposition of litter is a dynamic process. It regulates cycling of nutrients in ecosystem. The productivity of an ecosystem depends on the turnover of carbon and other nutrients. Microbes play an important role in releasing of minerals locked up in organic complexes. The release of nutrients, however, is regulated by various climatic factors. The microbial succession at different stages of degradation of litter is controlled by the litter quality and species composition and biological activity. The present paper reviews the status of litter production, decomposition, species diversity and Biological activities as affected by the climatic and edaphic factors in tropical ecosystem.

Keywords : Litter decomposition, microbes, species diversity, biological activities, edaphic factors, tropical ecosystem.

ABSTRACT

Microbes are integral part of the terrestrial ecosystem. Their function ranges from nutrients mineralization, stress alleviation to bioremediation in soils .There is a great possibility of using microbial inoculants as a biological tool for sustainable forestry and agriculture. This review gives an overview on the benefits of microbial technology and their contribution in development of green technology.

Keywords: Green technology, Microbes, AMF, PGPRs, Microbial consortium, Carbon sequestration.

Abstract

Microorganisms are potential tool for the production of large amount of potent and effective health care, food products and biofertilising agents. Recently, the marine microorganisms are considered as good sources of such products which may possess novel properties. There is a high scope for the exploration of marine microbes in order to search new product of economic importance from marine resources. Mangrove habitat is also part of marine habitat with the plant community having unique adaptation in their morpho- physiological and reproductive behavior. The high level of organic content in mangrove rhizosphre also leads to the colonization of degradative microorganisms and make them responsible for the creation of diverse and potential microbial community. Hence, mangroves are also considered as untapped resources of microbial metabolites and products. Several microorganisms including bacteria, fungi, algae, cyanobacteria, lichens are documented from mangrove habitats. These inhabitant microbes are the good source of secondary metabolites, therapeutic enzymes, food protective agents and mineral solubilisers. However, information on these aspects is very meager and thus the present review is an attempt to compile informations on the sources, properties and application of important microbes from mangrove ecosystems.

Abstract

Many airborne fungal spores are important as allergens, human and plant pathogens, in the bio-deterioration of stored materials like paper, leather, textile, paintings, historical monuments and spoilage of food stuffs. Surveys have been conducted to elucidate the magnitude of the problem. Indoor environment also plays an important role in the precipitation of allergic symptoms caused by fungal spores. The present review briefly highlights some of the qualitative investigations carried out on indoor environments like bakery, building, cold storage, cow shed, dormitory, educational institutions, garbage disposal plant, ware house, hospital, library, food grain godown, leather godown, house dust, poultry house, chick hatcheries, plastic industries and textile industries.

Abstract

Soil is the natural growth media for living plants and microbes, and rhizosphere is niche for a group of soil microorganisms inhabiting around the plant root zone. The warmed and humid agro-climatic conditions of the area aggravate A. flavus contamination and aflatoxin production in maize grains from field to storage. In this article aflatoxin contamination in maize, antagonistic activity of rhizosphere microbes against toxigenic A. flavus, through fungi, antagonistic activity of rhizosphere bacteria against toxigenic A. flavus, bacterization of stored maize seeds for aflatoxin control and inhibition of aflatoxin production in stored maize seed with rhizobacteria has been discussed in detail.

Abstract

Different algal taxa involved in the formation of lichen/s are presented. To-date 43 algal genera, comprising members of Cyanophyta, Chlorophyta and one genus each of families Phaeophyceae (brown algae) and Xanthophyceae (yellow-green algae) are recorded, based on personal observations coupled with literature. The various algal taxa forming different lichens belonging to various families is presented. The taxa Trebouxia de Puymaly and Trentepohlia Born. amongst green algae; Scytonema Ag. and Nostoc Vauch. Among blue-green algae are dominant genera involved in the formation of lichens. The yellow and brown algae are only of rare occurrence.

Abstract

In nature the roots of most of the plants are infected by fungi to form mycorrhizal associations, which play a central role in nutrient capture from the soil. These fungi are found in almost every terrestrial ecosystem; even in pioneer zones or very saline environments, and are reported to represent the second largest biomass component of many terrestrial ecosystems. Mycorrhizal associations are found in a broad range of habitats ranging from aquatic to deserts and alpine altitudes. In natural ecosystems mixed population of mycorrhizal fungi co-exist, with certain fungi becoming dominant in a particular patch and subsequently being replaced as environmental conditions change. Once this equilibrium is disturbed, the population dynamics is disrupted and a biomass may develop towards a few or even for one dominant fungus. Different species of mycorrhizae respond differently in response to the environmental conditions. In the present paper, all major types of mycorrhizal associations in different ecosystems are discussed.

Abstract

Various cropping systems and ecologies illustrate the positive use of chemicals both as fertilizers and pesticides and organic/biological sources within the frame work of Integrated Plant Nutrition and Plant Protection System (IPPS). While considering the organic/biological sources, green manures seem to be the best alternative that may largely suffice to the organic matter requirements of the soil under crop cultivation. Green manuring can be defined as a practice of ploughing or turning into the soil undecomposed green plant tissues for the purpose of improving physical structure as well as fertility of the soil. “Green manure” refers to fresh plant matter, which is added to the soil largely for supplying the nutrients contained in its biomass. The agricultural practices consisting of growing and ploughing under a green crop or addition of a green organic matter in the form of leaves and other succulent parts from outside to improve soil productivity is known as green manuring. In this review, advantages of green manuring, decomposition of green manure,   process of decomposition, factors affecting decomposition and effects of green manuring have been discussed in detail.

Abstract

Production technology has been worked out for crops and several inputs have been recommended which are to be applied in proper quantity at most suitable time to get the maximum return. Nutrition in the form of fertilizers is a must. However, injudicious use of agro-chemicals has resulted in diseases called ‘iatrogenic plant diseases’. Under the circumstances it is important to know the relationship between soil nutrients and plant pathogens which are causing the diseases of economic importance. Author has given adequate emphasis to micronutrients as at a very minor quantity they reduce the disease to an acceptable level. He has also discussed in detail about all the major and minor nutrients required by the plants and how their deficiency or over doses affect the plant pathogens and in turn the diseases.

Keywords:  Soil nutrients, plant pathogens, diseases, relationship

Abstract
 
Much attention has been paid to mycorrhza as a tool for improving the growth and health of plants.  The use of mycorrhiza in agricultureal, horticultural and forestry has been described. The significance of AM fungi in sustainable agriculture has been a subject of growing interest for the past several decades. In sustainable agriculture it is imperative to maximize benefits with low input costs. The fact remains that stable and lower human population is an integral component of sustainable agriculture and more so in an Indian context. Therefore, it is imperative to collect further information on the different aspects of AM fungal symbiosis as discussed in this article so as to utilize this plant microbe symbiotic system for the increased production and productivity in a sustainable manner. This may become possible when the integrated approach is made to study AM fungi right from the isolation of AM fungal spores to the high quality inoculum production and its application in the field. It is also imperative to stimulate new mutualism between mycorrhizal scientists and ecologists. It this regard, recent advancement made in the molecular techniques should be encouraged in order to obtain more authentic results. Adequate field testing of mycorrhizal inoculation and commercial exploitation of the potential benefits of mycorrhiza still rests on the development of suitable technology for mycorrhizal inoculum preparation.

Abstract

Higher plants can be exploited for the discovery of new bioactive products that could serve as lead compounds in pesticide development because of their novel modes-of-action. Different secondary metabolites of higher plants have been reported to exhibit efficacy as fungitoxicants as well as mycotoxin inhibitors. Pest controls using the botanicals are safer to the user and the environment because they break down into harmless compounds within hours or days in the presence of sunlight. The article presents different plant products found efficacious as antimicrobial and inhibitory to mycotoxin secretions by fungi. Their prospect as safe alternatives to synthetic antimicrobials in plant protection has been discussed.

Abstract

Eight species including 1 variety, 2 macro and 6 micro-lichens from Garhwal Himalaya, c 1500-2700 m, have been found to glow and emit fluorescent light, when exposed to long wave-length (254 nm) ultra-violet radiataions. Taxonomy and chemistry of all these species have been critically evaluated. The recorded taxa belong to families Physciaceae (4 species); Pertusariaceae, Rhizocarpaceae (1 species each) and Lichen imperfecti (2 species). The reported taxa are: Buellia hemispherica Singh and Awasthi, B. sub-glaziouana Singh and Awasthi; Pertusaria pertusa (Weig.) Tuck., Pyxine berteriana (Fee) Imsh. var. himalayensis Awasthi; P. cocoes (Swartz) Nyl., Rhizocarpon geographicum (L.) DC.; Lepraria taxonomic species I and II.

Abstract

C. albicans is a diploid, dimorphic yeast producing three morphologic forms: yeast cells, pseudohyphae and true hyphae. It is an opportunistic pathogen causing various types of candidiasis which are on the increase around the globe. It is a polymorphic yeast with its genome organized in eight diploid chromosome with its genome size ranging between 14.3 and 16 Mb having 5,733 to 6, 318 genes. It has two mating-type like (MTL) alleles that control the mating behavior. In its genetic makeup it resembles with Saccharomyces cerevisiae hence classified in the Saccharomycetales. The chromosome number from tetraploid to diploid is brought about by the parasexual mechanism. Keeping in view the increase of incidence of candidiasis due to C. albicans around the globe, it is important to identify the causative organisms to the species level correctly. Morphological, biochemical, germ tube test and growth on different media are often used for identifying isolated yeasts which sometimes takes days to week to develop in culture hence, rapid identification of Candida species in clinical laboratory is becoming increasingly important. Molecular techniques utilizing amplification of target DNA or PCR amplification of conserved regions of the genome and sequencing of the resulting PCR product and restriction fragment length polymorphism (RFLP) analysis of the ribosomal DNA, provides quick and precise methods for diagnostics or, identification of Candida species.

Abstract

Agroforestry is an intensive land use management system that integrates trees, shrubs, crops, etc. on a landscape level to achieve optimum benefits. Agroforestry is not only concerned with beneficial effects of one component on another, but it also involves the manipulations of negative effects to minimize their influence on the productivity of the overall system. In an agroforestry, trees and crops compete inevitably for light, nutrients, moisture and other resources. The interactions between tree and crop roots can also have an effect on soil organisms, which play an essential role in the functioning and productivity of agroforesty systems. Arbuscular mycorrhizal fungi (AMF) are one of the most important components of the soil biota in monoculture and agroforestry systems. AM fungi can rehabilitate degraded lands subjected to agroforestry systems and common mycorrhizal network may further enhance the benefits of agroforestry through vertical niche expansion of AMF. However, management practices of agroforestry affect mycorrhization, AMF community composition and diversity of AM fungi. This review focuses on AMF diversity, which plays a significant role in agroforestry systems.

Abstract

A field study of seven arid districts of Rajasthan was undertaken to evaluate the occurrence of selected tree species and arbuscular mycorrhizal fungal (AMF) associations with them. Five genera were identified in the rhizosphere of these selected tree species. A high diversity of AMF was observed which varied between different host tree species. Among the five genera, Glomus occurred most frequently, with four species, Acaulospora and Gigaspora were found with three species, while Entrophospora and Scutellospora was detected with two species. Gigaspora margarita, Gigaspora rosea, Glomus deserticola, Glomus constrictum, Glomus fasciculatum, Glomus mosseae and Scutellospora calospora were the most dominant species. The AMF spore density was not clearly affected by the host tree suggesting that biotic factors may be relatively less important than abiotic/edaphic factors for establishing population pattern. The spore density of AMF had a strong positive correlation with soil pH and organic carbon content and a negative correlation with Olsen’s P content of the soil. The association with AMF of these tree species native to the harsh environmental conditions of the Indian Thar Desert may play a significant role in the re-establishment and conservation of these multipurpose desert tree species.

Abstract

The ability of life to dwell in extreme environments on our mother planet earth right from a thirsty desert environment to highly water saturated oceans, gave the scientists a new area to work in during the 1990’s. The discovery of microbial life which had the ability to survive in conditions which were highly inhospitable for the normal life gave rise to a revolution in the field of science and technology. Extremophiles are one of the most primitive forms of life on earth since they have accustomed themselves to the present day harsh conditions compared to the normal environment. The last few years have seen a massive increase in their discovery, since the areas which once were thought barren by the scientists are now found inhabited by the microbial life. The extremophiles endure conditions right from extreme temperatures, pressure, salt concentration to radiations, metal tolerance, pH etc. During the past few years the industrial applications associated with the extremophiles and their products have led to their intensive exploration. Keeping in view the present and the future scenario, extensive efforts are still required in order to exploit the extreme environments for extremophiles and their products.

Abstract

Today more than 70% of energy is generated by coal-based thermal power plants. Indian coal contains about 40% ash, these power plants generate enormous amounts of fly ash, which is dumped in the nearby areas. This creates not only economy constraints but also imposes serious environmental problems, which are the potential hazards to the ecosystem. However, recent attempts in India and abroad are being made for biological association of fly ash e.g. in soil improvement, in wasteland management and also as a source of essential plant nutrients for nutrient deficient soil in terrestrial eco-system and agro-ecosystem. Fly ash has been found to have manifold advantages in agriculture especially in modification of soil texture and bulk density, in optimization of soil pH, in improvement of water holding capacity of soil, in the improvement of yield as a micronutrient supplement to soil and in creation of conducive condition for better plant growth. In this article utilization of fly ash along with VAM fungi and other microbes especially nitrogen fixers and phosphate solubilizers in removing the constraints of salt affected soils has been discussed.

Abstract

Extensive occurrence of alkaline soils has been reported from the Indo-Gangetic plains of Northern India, which is commonly known as ‘usar’ or ‘reh’. High alkalinity and high exchangeable sodium percentage (ESP) of such soil render it inhospitable for normal crop production. Research efforts over the past few decades have resulted in evolving a number of practices for the reclamation and management of such soils. However, application of biological inputs in combination with some moderately salt tolerant plant species seems to be a better option. AM fungi is well known to enhance the ability of plants to cope with environmental stresses generally prevalent in the degraded ecosystems and stress conditions by providing a number of nutritional and non-nutritional benefits. Since isolates of AM fungi differ in their tolerance to adverse physical and chemical conditions in soil and are better adapted to their native stressed microhabitat, selection of appropriate native AMF isolate is necessary for any large scale reclamation program. Taxonomic diversity of AM fungi in the alkaline soils of Upper Gangetic plains of district Allahabad and adjoining areas has been investigated and it was found that such soils have a detrimental effect on the AM spore population, distribution and diversity. Maximum spore population occurred in winter and minimum in summer. Glomus followed by Acaulospora was the most dominant genus. Acaulospora scrobiculata and Glomus fasciculatum were the most frequent species followed by Glomus mosseae and Glomus aggregatum. Glomus fasciculatum was the most abundant species followed by Glomus mosseae and Acaulospora longula.

Abstract

Microorganisms that harbour in the root region are the most befitting candidates for use as biocontrol agents. The rhizosphere provides the frontline defense for root against attack by pathogens. Pathogens face a complicated phenomena of antagonism from roots. They also compete with each other for site of colonization on the root surface and plant nutrients. The ideal biocontrol agent introduces and /or promotes the antagonists only, whenever required and are most effective in minimizing the wasteful application of inoculum to non-targets. Many genera belonging to bacteria, fungi, actinomycetes and viruses are used as biocontrol agents to combat several important plant diseases. The present review focuses on the use of bacterial antagonists ,particularly rhizobacteria, as biocontrol agents of fungal diseases of plants , their mechanism of action, molecular and genetic basis of antagonistic property and possible genetic manipulations to bring about desirable changes. 

Abstract

The traditional forage production systems and grazing lands are under extreme pressure due to the population growth of both human and livestock, decreasing area and inputs. In the central India, especially the Bundelkhand region, the soil is highly weathered, degraded and have low inherent nutrient, which was further worsened due to use of chemical fertilizers and pesticides, for enhancing crop production to meet the escalating demand of the population.

Abstract

Photosynthetic blooms of toxin producing marine algae are often referred to as “red tides”. Proliferations of freshwater toxin-producing cyanobacteria are simply called “cyanobacterial blooms” or “toxic algal blooms.” Biotoxins of cyanobacteria are water-soluble and heat stable and they are released upon aging or lysis of the cells. The primary types of cyanobacterial biotoxins involves three types of toxins: hepatotoxins (microcystin; cylindrospermopsin and nodularin), which are taken up by the liver and cause weakness and anorexia (loss of appetite); neurotoxins (usually anatoxin and saxitoxin), which effect the nervous system and dermatotoxins (aplysiatoxin and lyngbyatoxin, LPS), which cause skin and mucous irritations upon contact. Unlike freshwater toxic algal blooms, marine algal toxins become a problem primarily because they may concentrate in shellfish and fish that are subsequently eaten by humans, causing syndromes known as paralytic shellfish poisoning/PSP (paralysis due to saxitoxin and gonyaulatoxins), diarrhetic shellfish poisoning/DSP (diarrhea due to okadaic acid) , amnesic shellfish poisoning /ASP(memory disturbances due to domoic acid), neurotoxic shellfish poisoning/NSP (paresthesia due to brevetoxin; also bronchial spasms). Coral reef fishes are the vectors of another algal poisoning, the ciguatera fish poisoning/CFP (paresthesia, warm-cold sense inversion etc., due to ciguatoxins and maitotoxin).

Abstract

The word “mycorrhiza” literally means “fungus root” to describe the mutualistic association between roots of higher plants and certain fungi. Arbuscular mycorrhizae (AM) are the most common and widely occurring of all the mycorrhizal associations and have great economic significance. They belong to the phylum Glomeromycota. Mycorrhizal associations are potential factors in determining the diversity in ecosystems. They can probably modify the structure and functioning of a plant community in a complex and unpredictable way. Currently there is considerable resistance against the use of chemical pesticides and fertilizers, because of their hazardous influence on the environment, and on soil, plant, animal, and human health. Hence, use of biofertilizers and biocontrol agents are recommended in practical agriculture/horticulture/forestry.

Abstract

Ectomycorrhizal symbionts are important natural resources to revive degraded and deforested areas. Artificial inoculum of these mycobionts improves the growth of tree seedlings in nutrient poor soils due to the formation of extensive network of fungal mycelium responsible for the transfer of water and nutrients to the plants. Seedlings of tree species like, Pinus insularis, Quercus griffithii and Schima wallichii with ectomycorrhizae formed by Suillus bovinus, Boletus edulis and Scleroderma citrinum were studied in field condition. The study was conducted at two different stages of degraded sites. Results of the study indicated that seedlings with ectomycorrhizae were able to generate numerous lateral roots of greater length and thereby utilize water and nutrients more effectively than non- mycorrhizal ones The degree of mycorrhizal development varied in different host species with different fungal species. There was a strong relation between the colonization by mycorrhiza and the survival of seedlings. The study has suggested that mycorrhiza has a potential in reclamation of soil and reforestation of degraded land. S. bovinus., B. edulis and S. citrinum successfully colonized and promoted the growth of P. insulates Q. griffithii and S. wallichii respectively in reforestation programmes of degraded lands of Nagaland.

10.1 Introduction

During rain or heavy irrigation, a part of the rainfall or irrigated water moves below the effective root zone of the crop which moves further below and adds to the water table lying above the impermeable bed or hard rock which is called as  ground  water  reservoir. At  times  the  accumulated  surface  water  is  also recharged to the soil reservoir both naturally as well as artificially that add to the underlying ground water reservoir. This groundwater is an important source of water for irrigation as well as domestic uses. It is the most abundant fresh water resource of the earth. Underground water reservoirs contain large stock of fresh water resources. Total quantity of groundwater within 800 m distance below  the  ground  surface  is  more than  30  times  the  total  water  in  all fresh water lakes, more than 60 times the total water in soil and other unsaturated rock materials, more than 300 times the water vapour in the atmosphere and 3000 times the average volume of all rivers and rivulets in the world (Lenka, 2001). But the distribution of groundwater is not uniform.

11.1 Introduction

The laws governing the flow of water in wells are referred to as the hydraulics of wells. Just like surface water flows from a higher elevation to a lower elevation by gravity, groundwater also flows from a region of higher water table to a region of lower water table. This difference of water table measured by any two piezometers divided by the longitudinal distance between them is called as hydraulic gradient. Hydraulic gradient plays a dominant role in deciding the flow of groundwater. This hydraulic gradient together with the hydraulic conductivity of the aquifer material forms the main law of well hydraulics called as Darcy’s law. An understanding of Darcy’s law together with some other laws as discussed subsequently in this chapter is essential in order to know the discharge of a well in a particular formation. Darcy’s law is valid for studying groundwater flow in alluvial formations. However, it is not valid for aquifers having hard rock areas.

For seed storage in the gene banks, the seed stored should have high quality which is greatly affected by seed handling during collection. The details on these issues have been given by Smith (1995).  In terms of seed storage characteristics seeds are of following 3 steps.

Practical have a significant role in the study of any theoretical subject. Whatever a student learns in theory, he verifies it by actual doing with his own hands.  Thus, these reduce any doubts and misbelieve from his mind. These verifications by actually doing the things are performed in the laboratories.  A laboratory is a place with the basic and essential equipments and adequate facilities for students and teachers to perform and observe experiments.  Plants will continue to provide novel products as well as chemical models for new drugs in the coming centuries.  The arrival of chemical analysis and the characterization of molecular structures have helped in precisely identifying these plants and correlating them with their activity under controlled experimentation.

Year    Contributor    Description
1756    Duharmel du Monceau H.L.    Discovered callus formation in decorticated elm tree. 
1839    Schwann, T.H.    Proposed the view that each living cell of a multicellular organism would be capable of developing independently if provided with proper external conditions.
1853    Trecul, A.    Performed experiment on callus formation by decorticated trees such as Robinia, Pawlonia and Ulmus.

A tissue culture laboratory can be placed in any geographical area. The internal controlled environmental conditions permit isolation with a minimum of external influence. To decide where to build the tissue culture laboratory, the following factors must be taken into consideration:

Common rules for fine laboratory techniques call for:

    ·    A laboratory should have a record and a complete up to-date record of all the equipments and their operating manual.
    ·    A laboratory should have a record and detailed up to-date record of all the chemicals including the name of manufacturer with their     grade and arranged alphabetically in specific area
    ·    Strong acid and bases in safe area.
    ·    Chloroform, alcohol which are volatile or toxic must be stored in fume hood.

One of the most essential factors governing the growth and morphogenesis of plant tissues in culture is the composition of the culture medium. The basic nutrient requirements of cultured plant cells are very similar to those of whole plants. The basic nutritional requirements of cultured plant cells as well as plants are very similar. However, the nutritional composition varies according to the cells, tissues, organs and protoplasts and also with respect to particular plant species.  The appropriate composition of the medium largely determines the success of the culture. A wide variety of salt mixtures  have been reported in various media. A nutrient medium is defined by its mineral salt composition, carbon source, vitamins, plant growth regulators (PGR) and other organic supplements. When referring to a particular medium, the intention is to identify only the salt composition unless otherwise specified. Any number and concentration of amino acids, vitamins, growth regulators and organic supplements can be added in an infinite variety of compositions to a given salt composition in order to achieve the desired product.

Sterilization Techniques

Sterilization: All the materials, e.g., vessels, instruments, medium, explants, etc., used in culture work must be freed from microbes. This can be achieved by one of the following approaches:

Explant

The tissue obtained from plant to be cultured is known as Explant. It may include the parts of shoots, leaves, stems, roots, flowers and callus.

Maintenance of Aseptic Environment

All culture vessels, media and instruments used in handling tissues as well as the explants must be sterilized. The importance is to keep the air surface and floor free of dust. All operations are carried out in laminar air-flow, a sterile cabinet.In general, the methods of elimination of these sources of infection can be grouped under different categories of sterilization procedures: 

Modes of Culture 

Callus is a mass of undifferentiated plant tissues formed from plant cells or tissue cuttings when grown in culture. Tissues and cells of plant cultured in a liquid medium aerated by agitation grow as suspension of single cells and cell clumps. For growth, the cells require to divide, whereas, the cells breaking up from explant are mature, nondividing. Hence, the differentiated tissue undergoes modifications to become meristematic. This phenomenon of a mature cell reverting back to meristematic state to form undifferentiated callus tissue is called dedifferentiation.

Micropropagation /Clonal propagation

Micropropagation or clonal propagation is the growing of plants from meristematic tissue or somatic cells of superior plants on nutrient suitable media under controlled aseptic physical conditions. Sexually propagated plants (through generation of seeds) demonstrate a high amount of heterogeneity since their seed progenies are not true to type whereas asexual reproduction (by multiplication of vegetative parts) gives rise to genetically identical copies of parent plant. Thus, it permits perpetuation of the parental characters of the cultivars among the plants resulting from micropropagation. Micropropagation proves useful for propagation of: 

Experiment - 1
 
Aim: Micropropagation of Tobacco plant by leaf disc culture

Principle: The totipotency of the plant cells and tissues form the basis for in vitro cloning i.e., generation or multiplication of genetically identical plants in in vitro culture. The ability to propagate new plants from a cells or tissues of parent plant has many interesting possibilities.

A. Anther and Pollen Culture (Production of Haploid Plants)

Haploid plants possess a single set of chromosomes (gametophytic no of chromosomes i.e. n) in the sporophyte in contrast to diploids which contain two sets of chromosomes (2n). The existence of haploid plants was reported by Bergner (1921) in Datura stramonium. Guha and Maheswari (1964) reported the direct development of haploid embryos and plantlets from microspores of Datura inoxia by the cultures of excised anthers. After this, haploid plants have been produced via anther culture in more than 170 species. The anther culture technique is useful in haploid production.

The ultimate success of commercial propagation depends on the capacity to transfer plants out of culture on a huge range, at low cost and with high survival rates. The plants multiplied in vitro are exposed to a unique set of growth conditions (high levels of inorganic and organic nutrients, growth regulators, sucrose as carbon source, high humidity, low light, poor gaseous exchange) which may support rapid growth and multiplication but also induce structural and physiological abnormalities in the plants, rendering them unfit for survival under in vivo conditions. Poor control of water loss and heterotrophic mode of nutrition are main cause of deficient growth of in vitro plants.  Hence, gradual acclimatization is necessary for these plants to survive transition from culture to the greenhouse or field. During acclimatization the in vitro formed leaves do not recover but the plant develops normal leaves and functional roots. Once roots are well formed the plants are ready to be transferred into soil.The procedure of acclimatization of regenerated plantlets are: 

A. Somatic Embryogenesis
 
In plant tissue culture, the developmental pathway of various well organised, small embryoids resembling the zygotic embryos form the embryogenic potential somatic cell of callus tissue or cells of suspension cultures is known as somatic embryogenesis. The capability of somatic cell of a culture to produce embryoids is known as embryogenic potential.

Embryoid: Embryoid is a small, well organised structure comparable to the sexual embryo, which is produced in tissue culture of dividing embryogenic potential somatic cells.