eChapters

Since the dawn of the Industrial Revolution, mankind has been introducing numerous hazardous compounds into the environment at an exponential rate.  Environmental pollutants have become a major global concern. The modern growth of industrialization, urbanization, modern agricultural development, energy generation, have resulted in indiscriminate exploitation of natural resources for fulfilling the human desires and need, which have contributed in disturbing the ecological balance on which the quality of our environment depends.
 
Technological revolution has brought new changes in products and processes in industry. The waste generated from the development of products and processes are of concern to the environmental list. A variety of pollutants such as heavy metals, xenobiotics, polycyclic aromatic hydrocarbons (PAHs), chlorinated and nitro-aromatic compounds are found to be highly toxic, mutagenic and carcinogenic for living organisms (Zhang and Bennett. 2005; Samanta et al., 2002).

Bioinformatics is a multidisciplinary approach that combines computational and biological expertise to analyze biological data to advance research and development and it drew public attention with the announcement of the draft sequence of human genome by the then US President, Bill Clinton along with Craig Venter and Francis Collins in 2000. Bioinformatics and life sciences research are gaining attention in the government, industries and academic sectors. India was the first country in the world to establish a biotechnology information system (BTIS) network in 1987 through the Dept. of Biotechnology and created an infrastructure that enables it to harness biotechnology through the application of bioinformatics. Through this branch of science, biological data are acquired, stored and then analyzed. Bioinformatics can be used to store huge bioscience data for their future uses. By exploring computational tools, databases and new strategies for pests and diseases, resistant genes can be identified and plants with desired traits can be engineered to enhance agricultural productivity. Bioinformatics can be utilized in two ways for agriculture, viz., (i) at molecular level for application in breeding strategies and (ii) agri-informatics for land use planning, farmers window, early warning system, impact assessment and environmental applications.

ANTIBIOTICS

Antibiotic is a drug used to treat infections caused by bacteria and other microorganisms. Technically an antibiotic is a substance produced by a microorganism that selectively inhibits the growth of another. Penicillin was the first antibiotic discovered by Alexander Fleming in 1928, a significant breakthrough for medical science. Antibiotics had saved thousands of wounded soldiers in the I and II world wars. Also, use of it made surgery safer and increased the average life expectancy of human beings. Antibiotics are among the most frequently prescribed medications in modern medicine. Some antibiotics are ‘bactericidal’, meaning that they work by killing bacteria. Each type of antibiotic affects different bacteria in a different way. Some antibiotics can be used to treat a wide range of infections and are known as ‘broad-spectrum’ antibiotics. Others are only effective against a few types of bacteria and are called ‘narrow-spectrum’ antibiotics.

In recent years, we have witnessed an explosion of biological information and the bioinformatics data arising from the rapid research and unprecedented progress in molecular biology. The novel genomic technologies have revolutionized the drug designing, discovery and development processes in government as well as private pharmaceutical industries through the use of these technologies. Various databases are doubling in size every year and fortunately we have the complete genome sequences of more than 100 organisms. At present, the pharmaceutical industries have clasped genomics as a source of drug targets. They also distinguish that the field of bioinformatics is crucial for validating these potential drug targets and for determining the ones that are most suitable for entering the drug development pipeline. Due to our increased understanding of molecular biology, there has been a change in the way that medicines are being developed. Once upon a time, new synthetic organic molecules were tested in animals or in whole organ preparations. Now this approach has been replaced with a molecular target in which in-vitro screening of compounds against purified, recombinant proteins or genetically modified cell lines is carried out with a high throughput as a consequence of better and ever improving knowledge of the molecular basis of disease.

Bioinformatics can be defined as the application of computer technology for the management and analysis of biological data using computer to gather, store, analyze and merge the biological data. It consists of the organization of many kinds of large-scale biological data, particularly that based on DNA and protein sequence, into web-accessible databases and the methods required analyzing these data. Bioinformatics is a fast growing field within the biological sciences that was developed because of the need to handle large amounts of genetic and biochemical data. The goal of bioinformatics is to uncover the wealth of biological information hidden in the mass of data and to obtain a clearer insight into the fundamental biology of organism. This knowledge can have profound impact on various fields such as human health, agriculture, environment, energy and biotechnology. Bioinformatics involves use of various biological databases, which are archives of consistent data that are stored in a uniform and efficient manner. Biological databases are large collections of data that are relatively different to maintain outside the centers and institutions that produce them. These data are traditionally accessed and analysed using browser-based World Wide Web (www) interfaces. There are two types of databases i.e. Primary database and Secondary database. Primary databases contain information and annotations of DNA and Protein sequences, DNA and Protein structure and DNA and Protein expression profiles catalogued for the end users.

1.    Biological Control of Insect Pests
    
2.    Biocontrol Agents in Vegetables
    
3.    Mass Multiplication of Predators and Parasites
    
4.    Microbial Control
    
5.    Transgenic Plants
    
6.    Biological Control of Diseases
    
7.    Conclusion
        
References

Introduction
 
Natural control strategies that employ biological agents for pest suppression are generally classified as biological control tactics. In conventional usage, this term usually refers to the practice of rearing and releasing natural enemies:   parasites, predators, or pathogens. A slightly broader definition of “bio-control” includes any related management activity that is designed to protect or conserve natural enemies. Biological control is the use of living organisms to maintain pest populations below damaging levels. Natural enemies of arthropods fall into three major categories: predators, parasitoids, and pathogens (Altieri et al., 2005; Mahr et al., 2008).

Abstract

Biological drainage relies on vegetation, rather than engineering mechanisms to remove excess soil water through evapo-transpiration. It is often considered attractive because it requires only an initial investment in site development (planting of a “bio-drainage crop”) and (potentially) returns a benefit when the bio-crop is harvested for fodder, wood or fibre. Presently about one-third of the world’s irrigated area faces the threat of waterlogging. Considering long-term viability of bio-drainage, the systems would be subjected to the same scrutiny as other plant-based biological systems with regards to nutrient and salt-balance and soil considerations. Moreover, large-scale adoption of bio-drainage crops could include considerable tracts of land and socio-economic considerations.

1    Biological Hazards
    1.1    Bacterial hazards
    
2.     Fungal Hazards
    
3.    Viral Hazards
    3.1     Hepatitis A virus
    3.2       Norwalk virus
    
4.    Parasitic Hazards
    4.1     Parasitic worms
    4.2    Protozoan parasites
    
5.    Aquatic Biotoxins
    5.1    Paralytic shellfish poisoning (PSP)
    5.2    Diarrheic shellfish poisoning (DSP)
    5.3    Amnesic shellfish poisoning (ASP)
    5.4    Ciguatera fish poisoning (CFP)
    5.5     Puffer fish (Tetrodotoxic) poisoning (PFP)
    
6.    Pathogen Survival Through Cooking
    
References

ABSTRACT
Rice straw is one of the most abundant lignocellulosic agricultural wastes in India and can be used as a major resource for biogas production. The structure of rice straw is complex and is made up mainly of cellulose, hemicelluloses and lignin. The lignin physically shields the cellulose and hemicelluloses, the main components which can be converted to energy, and hinders the access of microbial enzymes to these carbohydrate moieties. To overcome this making the straw a potential resource of biogas production, effective pretreatment is necessary that can efficiently hydrolyse the straw and make it accessible to cellulolytic enzymes and methanogens. Various pretreatment methods which are employed currently in the market are discussed here. For a process to be economically feasible it is necessary that the pretreatment be efficient as well as cost effective. To gain some insights into this aspect, the techno-commercial feasibility of Biomethanation of rice straw has been discussed.

ABSTRACT
Nisargruna biogas technology has been developed in BARC for processing different types of biodegradable waste. This technology is based on biphasic separation of aerobic and anaerobic stages. Introduction of aerobic predigester has increased the efficiency of the process in terms of enhancing the quality and quantity of methane and also reducing the retention time of the process. Process parameters of the plant were studied and found that the modified design has proved very effective in faster digestion of complex waste. The technology has been commercialised and has spread across different parts of country for processing variety of wastes including kitchen waste, municipal waste, agriculture waste, textile waste and poultry waste. Microbial population from different stages of the plant was also studied and found their ability to convert waste to biogas, containing mainly methane.

Keywords: biogas, biphasic digestion, green energy, methane, microbial fermentation, Nisargruna, waste management

The successful AI program depends on the health of the semen donors followed by hygiene in semen collection, processing, storage and AI methods as well as reproductive health of the females. However, the microbial contamination may not be able to avoid completely but it can be reduced to the minimum threshold level by adopting hygienic procedures.

The hygienic condition of the neat / frozen semen samples can be assessed periodically by enumerating the bacterial load apart from the periodical screening of bucks for the presence of various causative agents in animals and its transfer to the females via semen samples.

Though both viable and total (viable and nonviable) bacterial counts can be done, the viable techniques are more commonly used in diagnostic and food hygiene procedures. The viable bacteria are capable of multiplication with the production of visible colonies on or in agar media. In viable techniques, the assumption is made that one well-spaced bacterial cell gives rise to one colony. The bacterial colonies, rather than bacterial cells, are counted in these techniques. Among the viable counting techniques like Spread plate, Pour plate, Miles, Misra, Filtration are available and each has its own inherent errors, the pour plate counting method is explained as follows:

Introduction

Agriculture is one of the promising sectors which offers marvelous potential for sustainable growth and play a key role in the economy of the country. Many of the foods that are already common in our diet are obtained from plant varieties that were developed using conventional genetic techniques of breeding and selection. Increase in the world population and limited food supply strained researchers to introduce and advance agriculture management and modern technologies along with conventional practices to attain highest possible crop productivity. Agricultural technology is based on the domestication of wild plants to create the crops that we have come to depend upon. Humans invented agriculture approximately 10,000 years ago when they began to harvest and cultivate specific plants to produce food. The improved plant traits selected by early agriculturalists were transmitted genetically to succeeding generations of plants. Both public institutions and private companies are now involved in crop genetic improvement.

Crop yields are affected by a combination of abiotic stresses, biotic stresses, and nutritional factors but abiotic stresses (drought, heat, cold or salinity) are the major factors that prevent crops from realizing their full yield potential (Edmeades, 2009). In traditional approach, breeders grow and cross varieties and then evaluate how the progenies vary in their ability to deal with stresses. The best-adapted plants are then selected for growing in fields exposed to stresses. Biotechnologists have taken advantage of recent advances in biotechnology and functional genomics to genetically engineer crops which can give better yield in adverse conditions than the unmodified ones (Manavalan et al., 2009; Umezawa et al., 2006). Drought, extreme temperatures (high or low), high salinity and cold are the major abiotic stresses that affect plant growth and result in significant yield losses. Although plants have evolved a wide spectrum of programs for adaptation to changing environment, the current understanding of the mechanisms associated with the ability of crops to maintain yield under abiotic stress are poorly understood (Witcombe et al., 2008; Munns et al., 2008; Bartels et al., 2005). New advances in ‘omic’ technologies are providing opportunities for identification of transcriptional, translational and post-translational mechanisms and signaling pathways that regulate the plant response. This chapter describers several examples of how modern crop technologies may be applied to broaden crop tolerance of various abiotic stresses and to increase total biomass.

Environmental constraints that include abiotic stress factors such as salt, drought, cold, extreme temperatures and heavy metalsalready a major limitingfactor for crop productivity and will soon become even more severe due to climate change conditions.Together, these stresses constitute the primary causes of crop losses worldwide, reducing average yields of most major crop plants by more than 50% (Boyer, 1982; Bray et al., 2000; Wang et al., 2003). Current climate change scenarios predict an increase in mean surface temperatures and drought that will drastically affect global agriculture in the near future (Le Treut et al., 2007).
 
Abiotic stresses trigger many biochemical, molecular and physiological changes and responses that influence various cellular and wholeplant processes (Wang et al., 2001, 2003). For example, drought, salinityand low temperature stress lead to reduced availability of water (alsoknown as dehydration/osmotic stress) characterized by a decreasedturgor pressure and water loss (Dhariwal et al., 1998; Boudsocq and Lauriere, 2005). Osmotic stress promotes the synthesis of the phytohormoneabscisic acid (ABA)which then triggers a major change in gene expressionand adaptive physiological responses (Seki et al., 2002; Yamaguchi and Shinozaki, 2006; Shinozaki andYamaguchi-Shinozaki, 2007).

Introduction

Stress in physics is any force applied to an object. Stress in biology is any change in environmental conditions that might reduce or adversely change a plant’s growth or development. ‘Stress’ or ‘pressure’ was introduced into the theory of elasticity as an amount of force for a given unit area. When sufficient force is applied to material, the material bends and the change in length is termed ‘strain’. With increasing stress, the initially linear relationship between stress and strain becomes nonlinear until the proportionality limit, after which the material deforms elastically (it can bend back), then plastically (it cannot bend back) until it ruptures. Since the 1930s, biologists have attempted to apply this terminology to biological systems, albeit the nature of the stresses will vary between nonliving materials and organisms.

Reproductive Biotechnology
    
Artificial Insemination (AI)
    
History and Future Perspectives of Artificial Insemination
    
Semen Cryopreservation
    
Buffalo
    
Goat
    
Cryoprotection and Anti Oxidants
    
Cryopreservation and Genetic Stability of Livestock Spermatozoa
    
Insemination Technique
    
Cattle and Buffalo
    
Sheep and Goat
    
Conception Rate with Artificial Insemination
    
Multiple Ovulation and Embryo Transfer (MOET)
    
Advantages of Embryo Transfer
    
MOET Includes the Following Steps
    
Superovulatory Treatments
    
Insemination
    
Recovery of Embryos
    
Synchronization of Recipients
    
Cattle
    
Buffaloes
    
Goats
    
Horses
    
In vitro Maturation, fertilization and culture of Oocytes
    
Historical Development
    
In Vitro Maturation of Oocytes
    
In vitro Sperm Capacitation
    
Scope
    
Limitations
    
Embryo Cryopreservation
    
Ultrasonography in Reproductive Management
    
Ultrasound-guided Transvaginal Oocyte Pick-up (OPU)
    
Embryo Cloning or Nuclear Transfer
    
Blastomere Separation
    
Embryo Splitting
    
Nuclear Transfer Cloning (NT)
    
Embryonic Stem Cell Complementations
    
Limitations and Future Prospects of Cloning
    
Sexing of Embryos and Separation of X and Y Chromosomes Bearing Sperms
    
PCR  in Sex Determination
    
Transgenic Animal Production
    
Gene Transfer Through Direct DNA Microinjection
    
Gene Transfer with Retroviral-Vector Assistance
    
Gene Transfer through Production of Germ-line Chimeras
    
Parthenogenetic Embryos: An Emerging Tool in Reproductive Biotechnology for Multiplication of Superior Germ Plasm
    
Applications of Parthenogenesis
    
Livestock Genomics and Marker Assisted Selection (Use of DNA Level Markers)
    
Stem Cells
    
Vaccine for Fertility Control and Increase Prolificacy
    
Auto-immunization to Increase Prolificacy
    
Biotechnology of Conservation of Livestock Breed Biodiversity
    
Gene for Prolificity: Booroola Merino
    
Role of Biotechnology in Enhancing Production
    
Milk
    
Biotechnology of Rumen Manipulation
    
Genetically Modified Ruminal Microorganisms

Biotechnology of Animal Feeding
    
Probiotics
    
Biotechnology Crops as Animal Feed
    
Biotechnology of Animal Products
    
Some New Products made Possible by Biotechnology Include

Biotechnology provides significant opportunities and greater effects in horticulture, where even minor changes such as quality, colour, aroma, flavour, structure, disease-pest resistance and postharvest behaviour bring tremendous achievements commercially. Tissue culture, genetic engineering, molecular breeding, biofertilizers, biopesticides and postharvest biotechnology are important aspects of biotechnology in horticulture such as fruit, vegetable, ornamental, spice, medicinal, aromatic and plantation crops.

Tissue Culture

Tissue culture is the true reality of the plant biotechnology. The annual demand of tissue cultured production constitutes nearly 10 per cent of the total world biotech business, amounting to 15 billion US dollars. The global production of tissue culture industry is expanding @ 15% per annum (Chadha, 2000). In India, more than 130 tissue culture units are presently producing > 300 million plantlets per annum (Choudhury and Tejaswini, 2000).

Animal Science Biotechnology Research Centres
    
Current Status and Some of the Achievements in Animal Heatlh
    
National Bioresource Development Board
    
Animal Biotechnology
    
Biotechnology Parks and Incubators
    
National Institute of Immunology, New Delhi
    
Bose Institute, Kolkata
    
Jawahar Lal Nehru University, New Delhi
    
National Centre For Cell Science, Pune
    
Centre for Dna Fingerprinting and Diagnostics (Cdfd) Hyderabad
    
National Institute for Plant Genome Research (Nipgr) New Delhi
    
Institute of Bioresources and Sustainable Development,Imphal
    
Institute of Life Sciences, Bhubaneshwar
    
Bharat Immunologicals and Biologicals Corporation Limited
    
International Centre for Genetic Engineering and Biotechnolgoy (Icgeb), New Delhi
    
Animal Biotechnology Research Abroad