eChapters

Introduction
Aquaculture, the farming of aquatic life like fish and shellfish, has become essential for global food supply. It helps meet the rising demand for seafood, supports countless livelihoods, and promotes sustainable development. As wild fish populations dwindle due to overfishing and environmental damage, aquaculture provides a sustainable way to ensure food security and economic growth. Monosex culture, the practice of raising only one sex of a species, is particularly useful for fish like tilapia and prawns, where one sex grows faster and more efficiently. By focusing on single-sex populations, aquaculture can boost production, simplify management, and increase overall yield. Monosex culture is important because it can improve profits while protecting the environment
Historical Development of Monosex Practices
The development of the monosex culture began in the mid-20th century when scientists started to investigate ways to control the sex ratios of fish populations. Early methods focused on selective breeding to improve traits like growth rate and size. Over time, advancements in genetic manipulation and hormonal treatments have revolutionized the field, allowing for more precise control over sex determination. Hormonal treatments like 17 alpha methyltestosterone for sex reversal in tilapia during the 1970s, significantly improved production efficiency. The development of genetic technologies, such as chromosome manipulation and CRISPR, has further propelled monosex culture into mainstream aquaculture practices. Today, monosex culture is recognized as a cornerstone of sustainable aquaculture, with ongoing research aimed at refining techniques and addressing ethical considerations associated with genetic interventions.

In genetic studies it is necessary to distinguish two causes of correlation is chefly pleiotropy, though linkage is a cause of transient correlation, particularly in populations derived from crosses between divergent strains. Pleiotropy is simply the property of a gene whereby it affects two or more characters, so that if the gene is segregating it causes simultaneous variation in the characters is affects. For example, genes that increase growth rate increase both stature and weight, so that they tend to cause correlation between these two characters. The degree of correlation arising from pleiotropy expresses the extent to which two characters are influenced by the same genes. But the correlation resulting from pleiotropy is the overall, or net, effect of all the segregating genes that affect both characters. Some genes may increase both characters, while others increase one and reduce the other the former tend to cause a positive correlation the latter a negative one. So pleiotropy does not necessarily cause a detectable correlation. The correlation resulting from environmental causes is the overall effect of all the environmental factors that vary; some may tend to cause a positive correlation, others a negative one.
Genetic correlation
Hazel (1943) introduced this statistic and is defined as the correlation between the additive genetic values of two traits. When two traits are considered together we have three population parameters:

ABSTRACT

Though the genetic control of sex determination is being explored in several animal systems, no much information is available on the genetic basis for sex specificities in dioecious or sexually polymorphic plant species. Date palm is a unique member of the family Palmaceae which exhibits dioecy. Here we report the sex-specific variation in the genomic DNA of male and female date palms as revealed from an extensive study conducted with palms representing different date palm growing regions of the Kingdom of Saudi Arabia. The genomic DNA content in females was less than 60 per cent compared to those of the male genotypes. Polymerase chain reactions carried out to amplify different segments of the alcohol dehydrogenase (AdhA) gene from the date palm genomic DNA yielded two DNA fragments each in the female genotypes where as the same primers amplified a single fragment in male plants. Genomic Southern analysis of Eco R1 restriction digests showed RFLP between the male and female genotypes with the male plants showing a single hybridization signal of approximately 14 kb size and the females showing six additional bands of varying molecular weights. The results of our investigations reveal the potential of molecular biology in differentiating the sex in date palm at DNA level. Further research is needed to develop DNA markers that will help to unequivocally identify the sex of dioecious plants at the seedling stage.

Plant breeding is essentially a technology. Any technology will stand the test of time if it is based on sound concepts. In the case of plant breeding, the concepts are provided by the science of genetics.

Plant productivity in its broad sense requires consideration of not only yield but also of a number of its direct and indirect components. For example in groundnut, besides pod yield, shelling percentage, 100-kernel weight and oil content are components relevant to defining productivity. A number of physiological (like biomass, leaf area, specific leaf weight), morphological (like days to flowering, number of branches, number of mature seeds), nitrogen-fixing, (where relevant, for example, number of nodules, nodule mass, nitrogenase activity) and such other characters influence yield directly or indirectly.

Yield and most yield contributing characters are quantitative in nature. A quantitative character is one which shows continuous variation. In contrast, qualitative characters like flower colour and seed coat colour show, in general, discrete variation and are controlled by fewer genes with major effects. A quantitative trait, however, is governed by many genes. The range of values of a quantitative character is described by a continuous distribution, usually assumed to be a normal distribution. The distribution is specified by the two parameters: mean and variance.

Plant breeding is the purposeful manipulation of characters in plants to create new genotype with a set of desired characters. Hence, it may basically be referred to as designed manipulation of the heritable variation for the character concerned. Living organisms possess the remarkable capacity to convert the non-living materials into living staff, which results in movement, growth, metabolism and reproduction, and thus continuity of living organisms from one generation to the next is accomplished. The continuity of life through transmission of characters is the subject of the study of heredity, while the resemblances and differences between individuals of the same or different generations is the concern of the study of variation. These two universal processes of continuity and of change, which are referred to as “Heredity” and “Variation” are primary consequences of all organisms. Organized study of these two biological processes is the science of Genetics.
Plant breeding, which may be termed as evolution of plant type directed by the will of mankind, is basically the process of selection of character(s) from heritable variation. Desirable heritable variations can also be induced through some genetic consequences like, hybridization, segregation, mutation, changing the number of chromosomes, etc. So frame of plant breeding lay on three basics:

Biochemical reactions are mediated by enzymes and all enzymes are proteins. Proteins are polymers of subunits (monomers) called amino acids which are often termed as ‘residues’. Each amino acid has an amino group (NH ) at one end and a carboxyl group (COOH) at the opposite end. 20 different kinds of amino acids occur naturally in proteins. Each enzyme consists of a certain number of amino acids in a precisely ordered sequence. The blueprint for making proteins is coded in the nucleotide sequence of DNA. The number of nucleotides which code for an amino acid is termed a codon. There are 20 common amino acids but only four different nucleotides. Obviously a singlet code (one nucleotide coding for one amino acid) could code only for four amino acids. A coding sequence of two nucleotides for one amino acid or a doublet code would produce 4₂ = 16 possible coding combinations or codons and this arrangement is not sufficient to take care of 20 amino acids. A codon size of three nucleotides for one amino acid or triplet code seems more likely as it produces 4₃ = 64 possible codons as illustrated in Table 43.1 (Strickberger, 1968).

11.1 Introduction

In chapter 10, we have discussed the different types of variation, namely, genetic, environmental and genotype × environment interaction variations. We have also learnt how to estimate the phenotypic variance and its components including genotypic (also called genetic), environmental and g × e interaction variances from trial data. Now in this chapter, we shall discuss on the genetic components of polygenic (quantitative) variation and its implications on breeding strategies.

11.2 Genetic Components of Polygenic Variation

In this chapter whenever we call genetic variation, we mean polygenic (quantitative) variation, and we know that variation is usually measured in term of variance. However, variation, variability and variance are almost used synonymously. The genetic variance has been classified into different components by various workers. Fisher (1918) divided genetic variance into three components: additive, dominance and epistatic (interaction) variances. Wright (1935) classified genetic variance into two components: additive variance and non-additive variance (dominance and epistatic variances). Mather (1949) classified genetic variance into two components: heritable fixable variance (additive variance and additive × additive epistatic variance) and heritable non-fixable variance (dominance variance, and additive × dominance and dominance × dominance epistatic variances). Later, Hayman and Mather further divided the epistatic variance into three categories: additive × additive, additive × dominance and dominance × dominance.

Abstract

Most of the sorghum accessions are landraces, and much of the cultivated area of sorghum is under local land races. The local land races are highly adapted to specific environmental conditions and are useful sources of genetic variation. Under the present investigation one hundred and two local land races of sorghum collected from different geographical origins were evaluated during kharif 2010 and kharif 2011 in order to assess the genetic diversity. The analysis of variances showed highly significant differences among the accessions for all the characters studied.

ABSTRACT

India is the largest producer of banana, contributing to 17.3 per cent of the global production. In Kerala, it is the leading fruit crop, being cultivated in an area of 99,412 ha with an annual production of 7,31,650 tonnes. Biodiversity in the cultivars of banana, which consist of triploids, is complex especially in Nendran. Nendran belonging to Musa AAB plantain subgroup is the leading banana cultivar of the Kerala. in Kerala, several landraces are available, cultivated in different parts, known in different local names. Twelve Nendran ecotypes of banana belonging to AAB genomic group were collected from Banana Research Station, Kannara, Banana Nursery Farm, Palode and Instructional Farm, College of Agriculture, Vellayani to ana lyse genetic divergence using RAPD marker and morphological traits. Out of the forty one decamer primers screened for RAPD analysis, 34 could produce amplification. Twenty five primers showed high level of polymorphism. Finally, six of the most promising primers viz., OPA-01, OPA-03, OPA-13, OPB-04, OPB-10 and OPB-12 were used for RAPD analysis. Statistical analysis for the morphological traits and RAPD marker were conducted using the software programme NTSYS pc version 2.02e. The matrix average taxonomical distances (similarity coefficient) among the ecotypes ranged from 0.59 to 1.00 in RAPD profiles and morphological profiles (dissimilarity coefficient) ranged from 2.82 to 11.21. In the dendrogram (RAPD profiles), Koonoor Ethan showed the maximum genetic divergence. Quintal banana and Zanzibar came under a single clusters at a distance of 0.79 and clustered together at a distance of 0.82. Both the ecotypes showed next higher genetic divergence among the Nendran ecotypes. In the case of morphological traits, the same trend could be observed. Koonoor Ethan showed the maximum genetic divergence at a distance of 11.21 and Quintal banana showed next higher genetic divergence at a distance of 9.11. Koonoor Ethan, Quintal banana and Zanzibar were distinct ecotypes among the Nendran ecotypes of Kerala

Abstract

The genetic divergence among 249 germplasm lines of maize was assessed by D2statistics based on nine parameters at Agricultural Research Station, Karimnagar. The germplasm lines were grouped into eleven clusters. Clusters I and II were the largest clusters with 73 and 79 genotypes, respectively. The highest inter cluster distance was observed between cluster X and XI followed by cluster V and XI indicating more variability in the genetic makeup of inbreds included in these clusters. Cluster V showed highest mean values for grain yield/plant and ear length. Cluster XI had the lowest mean values for plant height and ear height and these two characters showed maximum contribution towards total divergence among different characters. Based on inter cluster distances, inter crossing among the genotypes belonging to cluster V, IX, X and XI has the chance of getting high yielding hybrids with higher heterosis.

Genetic architecture of a population is the result of prolonged natural selection. The populations which exist in diverse environments might have been strongly diversified genetically. So, it is necessary to understand the extent and rates of genetic divergence existing between the diversified forms or types. Genetic diversity may be available in improved germplasm or it may exist only in genetically inferior stocks.

Genetic divergence among the parents is important in self pollinated crops because a cross involving genetically diverse parents is likely to produce high heterozygous as well as heterotic effect. In such a cross, more variability could be expected in the segregating generations due to the accumulation of the genes of both the parents. Genetic divergence, as one of the criteria of selection of parents is considered in plant breeding as early as 1962 (Murthy et al., 1962; Timothy, 1963). Later, Joshi and Dhawan (1966), Murthy and Arunachalam (1966), Arunachalam et al. (1984) and Lefort-Buson (1987) also stated that for exploiting heterosis as a means of increasing production, it is necessary to have parents of maximum divergence. The more diverse the parents, more is the chance of pronounced heterotic effects and increased spectrum of variability in the segregating generations.

The availability of statistical tools to quantitatively measure the genetic divergence between two or more populations and the relative contribution of individual characters to the total divergence have permitted to trace the evolutionary patterns in some crops such as rice and tobacco and in choosing the parents for hybridization in crop plants (Rao, 1958; Blackith, 1960; Morishima and Oka, 1960; Murthy et al., 1962). Among the several statistical methods developed for measuring the divergence between the populations, multivariate analysis (D² statistic) developed by Mahalanobis in 1936, has been found to be a potent tool. Mahalanbobis’s D² statistic is an effective tool in quantifying the degree of divergence at genetic level and provides a quantitative measure of the association between geographic and genetic diversity based on generalized distance. It is now known that the estimates of genetic divergence are also influenced by environments and seasons. Therefore, if the divergence analysis is conducted in a number of seasons and parents are selected on the basis of consistent divergence over the seasons, the problem of influence of seasons on divergence analysis can be largely overcome.

Abstract

Genetic diversity of thirty two rice genotypes from different states of India was evaluated through Mahalanobis’s D2statistic under integrated fertilizer management for fourteen yield and quality characters. The genotypes were grouped in to seven different clusters. Cluster I had nine genotypes. Three genotypes each were included in cluster II, cluster IV and cluster VII, whereas six and seven genotypes in cluster III and cluster V, respectively while the cluster VI had only one genotype. The results revealed that the geographic diversity might not always be related to genetic diversity. Kernel length after cooking, days to maturity and kernel breadth contributed maximum towards divergence indicating their importance in choice of parents for the hybridization programme.

Date palm (Phoenix dactylifera L. Family-Palmaceae) also known as Khajoor or Kharek is an ancient important fruit tree of semi-arid and arid regions of the world. It grows well under poor desertic soils due to its hardy plant characteristics and deep root system. It is also one of the most suitable fruit trees, which can be easily grown under saline conditions. Date palm grows as much as one feet per year, and as high as 80-100 feet under favorable environment. It is well known fact for date palm that its feet in the water and its head in sun. It requires dry hot climate for growth and development of fruits. In arid region, crop production is risky preposition, where date palm cultivation contributes in achieving food security, high nutritive value food, crop diversification, desertification control, income generation and foreign exchange earnings. It can be grown at such places, where adequate irrigation facility is available; besides, other climatic requirements (Chandra et al, 1992, Singh et al, 2007). The date tree has religious significance. The fruits are used during holy month of Ramzan by Muslim peoples. As Saudi Arabia is principal producer of date palm in the world, the palm tree is incorporated in the national emblem of Saudi Arabia to represent vitality and growth

In recent years, we are just experiencing a surplus production in cereals and oil seeds leading to self-sufficiency through green revolution and yellow revolution. However, shortage in the production of vegetables has drawn the attention for increasing the cultivation of vegetables to provide food and nutrition security.

Vegetables are being cultivated over an area of 49 million hectares with the production potential of 487 million tonnes in the world. This accounts for 2.85 per cent of total cropped area in the world. India is the second largest producer of vegetables next to China, sharing nearly 12 per cent of the total world output (Joshi and Shukla, 1997). Vegetables occupy nearly 8.02 million hectares with the production potential of 133.10 million tonnes in the year 2009 in India (Anonymous, 2009).

Bhendi (Abelmoschus esculentus (L.) Moench) is an important member of family malvaceae and commonly known as okra or ladyfinger in India. It is one of the most ancient and traditional vegetable crops grown in tropical and subtropical regions of the world (Martin and Ruberte, 1978). Bhendi is originated from tropical Africa with 2n = 8x = 72 or 130 or 144 chromosomes and is an allopolyploidy in nature (Joshi and Hardas, 1956; Suresh Babu, 1987). Martin (1982) reported that it behaves as a diploid. Under the genus Abelmoschus, there are 30 species in the old world and four in the new world (Joshi et al., 1974). Out of them, Abelmoschus esculentus, is the only species known to be cultivated. Bhendi is being raised in India in an area of 0.44 million hectares with an average production of 4.52 mt with the productivity of 10.27 t/ha (Anonymous, 2009).

Introduction

India is the largest producer of pulses in the world, both in quantity and variety. But, presently, India is one of the largest importer of pulses. India imported pulse grains upto a tune of approximately 4000 crore rupees during 2006-07. It accounts for about 20 per cent of the total import bill during 2006-07. This is because of the green revolution (quantum jump in cereal production) accompanied with changes in the infrastructures and incentives including input supplies and price support systems in favour of major cereals. It altered the traditional cropping pattern against pulses with decades of emphasis on research as well as production in superior cereals coupled with a near total neglect of the rainfed areas, pulses were driven out of not only the irrigated areas, but also the rainfed farming and were relegated to the marginal lands. Further more, the weak infrastructural support for input supply, credit and marketing in the rainfed areas, the traditional home of pulses, also adversely affected the prospects for pulses. A vicious circle of low input use and low output thus got built in. Lack of processing and marketing facilities in pulses also contributed its share to the woes of pulse growers. The increasing shortage of pulses, resulted in the need for more and more import which, in turn has dampened the speed of rejuvenation of pulses sub-sector of agriculture sector.

The net per capita availability of pulses has fallen from 60.7 (1950-51) to 33.4 g (1991-92). On the contrary, the daily per capita availability of cereals has registered an increase from 334.2 (1950-51) to 443 g (1991-92). It leads to increase in the pulses/cereal ratio from 0.18 to 0.08 g i.e., by 55 per cent. This is despite the increases of 24.36 per cent in area; 61.71 per cent in production and 29.93 per cent in production. It is significant to note that almost all these increases had taken place during 1950-51 to 1960-61. The area, production and yield of pulses have either stagnated or declined since then. This stagnation of pulse production and productivity should be viewed seriously not only from the point of security and quality of food for our people, especially the poor and the rural population, but also from the soaring import bill, imbalance and distribution in the cropping pattern and resource allocation among various sub-sectors of agriculture.

The Coconut palm is a monotypic species of the family Arecaceae, under the tribe Cocoideae. It is considered as an important commercial crop in more than 18 countries in the world. The palm provides food, drink, shelter and also supplies raw materials for a large number of industries. Every part of the palm is utilized for some economic purpose or another. Hence, it is referred to as ‘Tree of Wealth” or the “Tree of Life” (Satyabalan, 1993). It is native of South East Asia. Genetic diversity has become one of the keywords of scientists who are concerned about the sustainable management of different tree crops. Genetic diversity plays an important role in tree breeding, because hybrids between populations of diverse origin, generally display a greater heterosis than between closely related parents (Zobel and Talbert, 1986). The present study was formulated to identify divergent parents for future breeding programme.

Two hundred and fifty genotypes of coconut cultivar Chawghat green dwarf, distributed in the two districts of Kerala viz., Kottayam and Pathanamthitta were evaluated for nut yield per plant during June-July, 2000. Seventy five genotypes, which had single tree nut yield of more than population mean ± 2 SE were selected as per the method outlined by Ledig (1974). These 75 genotypes were observed for 10 nut and endosperm characters in two seasons (years), during June-July 2000 and 2001.

Each tree was considered as a single genotype. Thirty nuts from a single tree were collected and divided into three replications (Chauhan and Kanwar, 2001; Thirugnanakumar, 2006a, b). Observations were recorded on 10 nut and endosperm characters viz.,1) oil content (%), cold percolation method; (Kartha and Sethi, 1957), 2) weight of unhusked nut (g), 3) weight of husked nut (g), 4) diameter (polar) of the husked nut (cm), 5) diameter (equatorial) of the husked nut (cm), 6) thickness of husk (cm), 7) husk: nut ratio, 8) thickness of meat (mm), 9) weight of kernel (g) and 10) weight of copra (g). The mean values so obtained were subjected to statistical analyses, in Randomized Block Design, as suggested by Chauhan and Kanwar (2001) and Thirugnanakumar et al.(2006a, b). The D² estimates were made following Mahalanobis (1936), as described by Rao (1952). Clusters were prepared following Tocher (Rao, 1952).

Gamboge tree Garcinia gummi-gutta (L.), is a member of the Clusiaceae family. It is a botanical cousin of Garcinia indica Choisy. It is a cross pollinated crop. It is called as Kodumpuli in Kerala. It is native of Tropical Asia. It thrives best in the ever green forests of Konkan, stretching from southward to the Kerala coast and Western Ghats upto 1800 m min the Nilgiris (CSIR, 1956). In Kerala, majority of the populations occur naturally in the central districts of Kerala, of different altitudes ranging from sea level to 200 m.

It is one of the potential under-exploited fruit crops. Now, it is gaining momentum for its commercial, industrial and medicinal importance. The dried rind is sold in the market at the rate of Rs. 200 per kg (Muthulakshmi et al.,1999). It is used as a food preservative, spicy source with astringent taste. It is meant for its good flavour, taste and keeping quality. The fruits are too acidic and cannot to eaten raw. The dried rind has unique use in fish curries for imparting its delicate flavour (Sarah, 1998). Dried rind can also be used for polishing gold, silver and coagulating rubber latex. Hydroxy citric acid (HCA) is a very rare natural components being extracted from the rind and is marketed in the name of ‘citrin’ and ‘citrimax’. It has high export value and fetches considerable foreign exchange. In foreign countries, it is used as a herbal medicine against cardiac diseases and for weight management through blocking fat synthesis. The derivatives of acid are potent metabolic regulators of obesity. The unique acid, lowers the blood lipids such as cholesterol and triglycerides by triggering the fatty acid oxidation in the liver through thermogenesis.

Introduction

The nature and magnitude of genetic variability present in the genetic stock afford the plant breeder, information to formulate a purposeful breeding programme for crop improvement. The association and the influence of yield components with yield, their heritability and genetic advance would characterise the various steps in the breeding programme in achieving the aim of the breeder. Studies on these lines in various crops have hastened the realization of crop improvement in general.

India grows a variety of pulse crop which probably no other country in the world grows. These are multiple utility, energy high crops as they provide protein for human consumption, green nutritious fodder and enrich soil fertility through biological nitrogen fixation. Vigna radiata (L.) Wilczek, commonly known as greengram or mungbean, is the most widely distributed of the six cultivated Asiatic Vigna species.

The current breeding approaches to yield improvement in greengram are based on the recognition that this crop have lost a large part of their genetic variability in the process of adaptation to stress environment. This variability must now be regenerated.

The foremost need for this purpose is the collection of germplasm from different parts of the world and the organisation of a very intensive hybridization programme, using diverse genetic stocks as parental lines. Selection of parents for hybridization based merely on geographic diversity can no more be a suitable criterion. The importance of genetic diversity has long been appreciated by crop specialists. Such an analysis will eventually help to choose desirable parents for hybridization and evolve superior genotypes.