eChapters

5.1 Graphical Representation of Data

Diagrams are generally useful for the purpose of publicity and propaganda. No statistical conclusion can be drowning as these provide only an approximate and rough expression about the phenomenon. Thus for a more rigorous and improved representation of numerical statements graphs and charts are used.

Graphs are generally drawn with the help of two perpendicular lines known as x-axis and y-axis. The following are the various types of graphs, which are in common use:

To address the present day problems in agriculture and horticultural sectors and also to equip the graduating and postgraduate agricultural students, the ICAR has been continuously striving to bring necessary reforms for quality enhancement in agricultural education. The Council has appointed National Core Group and BSMA Committee for revision and restructuring of Post graduate and Doctoral syllabi in consultation with all the stakeholders to meet the challenges and harness opportunities in various disciplines of agriculture and allied sciences. It has been felt that a paradigm shift is necessary in academic regulations to comply with various provisions of National Education Policy-2020. The syllabus of Masters’ and Doctoral programs was restructured and new courses were introduced.

Once cells are obtained from a culture collection or isolated from animal tissue,, cells are put in the flask with growth medium. The cells are inoculated at a density of 104-105 cells/ml to get a concentration of 106 cells/ml or 105 cells/cm2 in a solid surface in 2-3 days because of nutrient limitation, accumulation of toxic metabolite or lacking of growth surface.

Introduction

Use of acid/base is common in laboratories for experiments like titration and proper safety in their handling laboratory is necessary. In this chapter we will briefly discuss about the safety measures necessary to be adopted while using acids/bases in laboratory for any experiment.

Handling of Strong Acid/Base

There are four major points that need to be taken care of while working with strong acids or bases that might be quite harmful if any accident happens.

1. Protect Yourself

Wear a lab-coat and acid-resistant gloves: Always use lab-coat/apron and make it sure that the sleeves properly cover your arms. More importantly, use gloves made of acid-resistant materials and also wear shoes to protect your feet while wearing long-pants/jeans. Female with long hair, must tie her hair properly (with rubber band) to avoid any disturbance caused by appearance in between.

Wear safety goggles: It is important to wear safety goggles to protect your eyes using larger and fitting goggles that cover front as well as sides of your eyes. Always use properly fitting and adjustable goggles because smaller/ loose goggles may not protect the areas around your eyes against accidental acid spills and it may fall down from your face, if it is too loose.

Locate emergency wash area: There must be an emergency washing area nearby the work place or laboratory containing lab spill management kits. All the workers in the laboratory must be aware of using the kits and emergency plans.

Neutralize acid: Don’t panic even if an acid or chemical spill happens. Stay calm and act as quickly as possible. In case an acid spills, neutralize it by using sodium bicarbonate so that they can be cleaned and disposed safely. If acid comes in contact of skin, wash it off under running tap water but do not use/ apply sodium bicarbonate on skin.

Introduction

For proper and efficient experiment to be conducted, experimenters need so many chemicals to deal with. This includes different acids, base, salt, different kind of indicators and so on. Some of these chemicals are safe for health, but some of them are dangerous to health when come in close proximity to our body while some of the chemicals cause health issues on inhaling. These may cause improper functioning of some of our physiological activities. Acids and bases are very dangerous for our tissues when come in our contact. These may cause serious respiratory problem in addition to injuries on coming to our contact. Some chemicals are exploratory yet they may cause even death of the person working with them in laboratory. Therefore, mere use of the chemicals in laboratory is not only the objective of the experimenter. The person working in laboratory should also be concerned about the proper use and handing of the chemical while working with it. Thus, every researcher of an institution who has to work with chemicals in a laboratory should be made aware about the chemicals to be used in the laboratory and the consequences if any mishandling of a laboratory chemical occurs. Not only these, suitable precautionary measures should also be known to the researcher along with ensuring the availability of the required safety equipment/installations. Hence, a proper understanding of the ways of handling of chemicals in a laboratory is of prime importance for the personals like you who are working or have to work in laboratory.

Safe Handling of Chemicals in Laboratory

Safe use/handling of chemicals in laboratory include minimized exposure to chemicals, maintaining safety data sheets, proper labelling, storage, segregation, and transport of chemicals for personal hygiene.

Introduction

We come across a variety of chemicals every day in a laboratory. While some of them are relatively safer, others are extremely hazardous. Thus, it is very important to know the potential hazards that can be caused by the chemicals present in the laboratory and the safety measures needed to be followed to avoid the hazards. Additionally, we should also be aware of the steps necessary to be taken on such hazardous situations. According to IUPAC, a hazardous chemical mean the chemical which has the potential to cause damage in various ways. In a laboratory, there are chemicals that might be irritant, carcinogen, respiratory fibrogen, systemic poison, asphyxiant, flammable, etc. which have the potential to cause hazard to the workers or environment. Therefore, it is important to use appropriate procedure to reduce the risk and protect the health/safety of laboratory personnel, the public and the environment.

Types of Hazards Associated with Chemicals

Chemical hazards: The hazards caused by chemicals can be broadly classified into three categories.

1. Health hazard: This is also known as toxic effects of chemical. The risk associated with a chemical in laboratory depends on the extent of exposure and the inherent toxicity of the chemical. Many chemical reactions form the product that might be much more toxic than the reacting chemicals. For example, inadvertent mixing of formaldehyde (a common tissue fixative) and hydrogen chloride results in the generation of bis(chloromethyl) ether, a potent human carcinogen. For most of the chemicals, the route of exposure (through skin, eyes, gastrointestinal tract, or respiratory tract) is more important (Figure 17.1) that must be considered during risk assessment.

Livestock is an integral component of Indian agriculture which is primarily a mixed crop-livestock farming system and plays an important role in the socio- economic life of India. Livestock contributes significantly to the growth and development of agricultural sector by providing a rich source of high quality products such as milk, meat and eggs and by supporting livelihood of more than two third of rural population. Livestock has a crucial and rapidly increasing role infood security and economic stability worldwide Livestock sector contributes for 4.11% of GDP and 25.6% of total Agriculture GDP. The importance of livestock has been undergoing a steady transformation with the contribution of livestock in total agriculture and allied sector Gross Value Added increasing from 24.32% in 2014-15 to 28.63% in 2018-19. Owing to factors such as population and economic growth, urbanization, improvements in transportation and storage practices,its future importanceformeeting human nutritional requirements of food and fiberand a major contributor to agricultural GDP is evident.

To alleviate the concerns raised by a rapidly growing demand of food security and the need of ensuring sustainability of natural resources, we need to better understandthe ways which wouldspeed up commercialization of livestock production so that it can contribute effectively to the bio-economy. Livestock performance and productivity can be improved by adopting proper diet and feeding practices, improved farm management and disease controlstrategies.

Stress is described as the cumulative detrimental effect of a variety of factors on the health and performance of living beings (Rosales, 1994). Heat stress arises when there is an imbalance between heat production within the body and its dissipation. Homeotherms can maintain their body temperature within a relatively narrow range and both physiological and behavioural responses help in thermoregulation. Stress occurs when an animal suddenly faces a change in its environment. Heat stress during summer and post summer months in tropical countries is a problem of great concern among farmers and livestock producers as it costs both production and reproduction of animals.

Principle

Red blood cell sticking (hemadsorption) can reveal the presence of certain viruses. This happens because these viruses, like influenza or measles, sprout proteins (hemagglutinin) on their infected host cells. These proteins act like Velcro, attracting red blood cells and causing them to cling to the surface. A hemadsorption assay uses this natural process to check for viruses. It's faster than waiting for the cells to show damage (cytopathic effect), allowing for earlier detection. Haemadsorbing viruses can be detected several days prior to the appearance of a cytopathic effect.

Equipment

a) Biosafety cabinet level 2 (B2)

b) Carbon Dioxide (CO2 ) Incubator (set to 37°C with a 5% CO2 in air atmosphere)

c) Refrigerated centrifuge

d) Refrigerator

e) Inverted Microscope

f) Micro pipettes (1-10 μl, 10-200 μl, 100-1000 μl)

g) -86°C/-80°C deep freezer h) Autoclave

i) Hot air oven

j) Filtration Assembly

Dirying in India has traditionally been the preserve of landless agricultural labourers and small and marginal farmers, who have maintained very small herd sizes. However, of late, with increasing consumer awareness regarding milk quality, there has been a marked increase in the number of large, well-organized dairy farms which cater to predominantly urban markets. Terms like clean milk production, organic milk, microbial load of milk etc. are being used more frequently while referring to milk quality. Larger, intensive dairy farms not only profit from the economies of scale by way of optimum utilization of land, labour and resources, but also benefit from the fact that it is easier and cost-effective to implement more efficient technologies like machine milking, manufacture of by products, chilling, packaging, bulk transport etc. Further, most of these farms are able to realize a premium price for their products on account of high quality and brand identity, thus leading to greater profitability.

Estimates of heritability use statistical analyses to help to identify the causes of differences between individuals. Because heritability is concerned with variance, it is necessarily an account of the differences between individuals in a population. Heritability can be univariate–examining a single trait – or multivariate – examining the genetic and environmental associations between multiple traits at once. This allows a test of the genetic overlap between different phenotypes: for instance hair colour and eye colour. Environment and genetics may also interact, and heritability analyses can test for and examine these interactions (GxE models).

Heritability measures the fraction of phenotype variability that can be attributed to genetic variation. This is not the same as saying that this fraction of an individual phenotype is caused by genetics. For example, it is incorrect to say that since the heritability of personality traits is about 0.6, that means that 60% of your personality is inherited from your parents and 40% comes from the environment. In addition, heritability can change without any genetic change occurring, such as when the environment starts contributing to more variation. As a case in point, consider that both genes and environment have the potential to influence intelligence. Heritability could increase if genetic variation increases, causing individuals to show more phenotypic variation, like showing different levels of intelligence. On the other hand, heritability might also increase if the environmental variation decreases, causing individuals to show less phenotypic variation, like showing more similar levels of intelligence. Heritability increases when genetics are contributing more variation or because non-genetic factors are contributing less variation; what matters is the relative contribution. Heritability is specific to a particular population in a particular environment. High heritability of a trait, consequently, does not necessarily mean that the trait is not very susceptible to environmental influences.Heritability can also change as a result of changes in the environment, migration, inbreeding, or the way in which heritability itself is measured in the population under study. The heritability of a trait should not be interpreted as a measure of the extent to which said trait is genetically determined in an individual.
The extent of dependence of phenotype on environment can also be a function of the genes involved. Matters of heritability are complicated because genes may canalize a phenotype, making its expression almost inevitable in all occurring

Heterosis, hybrid vigor, or outbreeding enhancement, is the improved or increased function of any biological quality in a hybrid offspring. The adjective derived from heterosis is heterotic.Heterosis is the occurrence of a superior offspring from mixing the genetic contributions of its parents. These effects can be due to Mendelian or non-Mendelian inheritance.

Definition: Heterosis is defined as the percent increase in the performance of outbred animals over the average of their parents.
The mean superiority of hybrids over the average of their parental lines is called heterosis. Heterosis or hybrid vigor is the increased vigor of the offspring over that of the parents when unrelated individuals are mated. Hybrid vigor includes greater viability, faster growth rate, greater milk production and greater wool production in domestic animals. The amount by which the hybrids exceed the mean performance of better parent is called heterobeltiosis or Euheterosis. The term heterosis was coined by G.H. Shull (1914). Heterosis or hybrid vigour is synonym to each other. However, the heterosis is a phenomena exhibited by an individual or a group of individuals due to heterozygosity of genes. Heterosis in quantitative terms can also be defined as the non-additive gene action. While “hybrid vigour” is the resultant of heterosis phenomena expressed phenotypically by an increase in vigour, size, production, reproduction, survival rate, growth, and economic returns etc. the heterosis is a measure of extent magnitude of out breeding.
In livestock, hybrids may be produced by crossing between two species/breeds/ lines/strains. Technically, heterosis may be positive or negative. However, the desirability of a trait is more important than the sign of heterosis. In some cases, the negative heterosis could be a desirable one (e.g. age at first lay, age at first calving, calving interval, back fat thickness etc.). The amount of heterosis obtained usually depends upon the extent of heterozygosity attained by the hybrids, which in turn is based on the diversity of sire and dam lines crossed. It also depends upon the degree of dominance, over dominance and/ or for which the heterosis is exhibited. Thus, the main causes of heterosis are directional dominance, over dominance and epistasis.

This alternative pathway for glucose oxidation has enzymes in the cytosol through which glucose is degraded to carbon dioxide. It is also called a shunt because carbon atoms from glucose 6-phosphate take a long route before they proceed down the EMP or glycolytic pathway. This pathway is anabolic in nature as it produces many intermediates. In this pathway, two NADPH are generated from one glucose 6-phosphate molecule. No ATP is generated or consumed.
Overall, this pathway needs three glucose-6-phosphate molecules to complete all the reactions. Therefore, one cycle run produces 2 mol of fructose-6- phosphate, 1 mol of glyceraldehyde-3-phosphate, and 3 mol of carbon dioxide from 3 mol of glucose-6-phosphate with the reduction of 6 mol of NADP+ to NADPH.
Overall reactions of the HMP pathway are as follows:
3 Glucose-6-P + 6 NADP+→ 3 ribulose-5-P + 3 CO2 + 6 NADPH
3 Ribulose-5-P → 2 xylulose-5-P + Ribose-5-P
2 Xylulose-5-P + Ribose-5-P → 2 fructose-6-P + Glyceraldehyde-3-P

Introduction

Raising milk and meat production are long-standing global issues. Researchers are learning that present breeding efforts won't be sufficient to meet anticipated future food demands given the current climate scenario. The animals that influence the overall yield of the field must be screened as soon as possible. In order to build more successful modern breeding programmes, high-throughput phenotyping is currently being included into conventional breeding operations. Despite the public accessibility of their genetic information online, there is still a lack of phenotypic data on the genomes of various animal breeds because environmental factors make it more difficult to define phenotypes and increase the likelihood of measurement error (Rahaman et al., 2015). Genomic selection (GS) is a strategy that predicts the genomic estimated breeding values of lines in a breeding population using information from genome-wide markers (Meuwissen et al., 2001). When compared to other conventional methods like marker-assisted selection (MAS), genomic selection has some inherent advantages. These include boosting genetic gain by reducing breeding cycles and acquiring minor effect loci based on markers dispersed throughout the entire target genome. Reliable phenotypes and genotyping are both necessary for the training of accurate prediction models for genomic selection. Phenotyping is regarded as a significant factor restricting genetic improvements in animal breeding due to high labour and time expenditures. Traditional approaches of phenotyping are prohibitively expensive, time-consuming, and slow.

ABSTRACT

This paper provides an account on the origin of the concepts of IP, gradual development and their culmination at the TRIPS.

Introduction

Intellectual property rights form the most prominent and ever-expanding category of rights in the 21^st Century. It differs from other proprietary rights in many respects and prevails in most articles of law, which influence our daily life. The economic significance of intellectual property rights has made it a subject of global political interest. In the broader sense, the term “intellectual property rights” connotes different categories of rights such as patents, copyrights, trademarks, designs, plant varieties, semiconductors, geographical indications, trade secrets and data exclusivity with varying scope

Definition of Animal Breeding
Animal breeding, as the application of science to the genetic improvement of animals, implies a close inter relationship between theory and its application. Genetics has provided the matrix form which logical principles could be developed and tested by experimentation and practice.
During the 20th century, genetics has assumed a broader meaning and numerous subdivisions of the discipline has emerged. Advances in animal breeding also have drawn heavily on contributions from statistics, biochemistry, physiology, economics and other disciplines. Animal breeding and reproductive physiology have been uniquely interwoven.
Animals with superior genotypes cannot contribute to succeeding generations unless their reproductive capacity is maintained at satisfactory levels.
Livestock production is an economic enterprise. Hence, animal breeding recommendations must withstand the scrutiny of economic, as well as genetic considerations, before they are accepted and integrated into enterprises by breeders. As a consequence, a close relationship between the breeder and the science, application and theory has been nurtured.
History of Animal Breeding
• Till 500 A.D. when the fall of Roman Empire began animal breeding was at its esteem. Withthe fall of Roman Empire for about 1000 years called Dark and Middle Ages, animal husbandry was at a still.
• From 1700 A.D., again there was an improvement. The beginning of modern animal breeding is to be found mainly in England and Europe.
• The British Royalty encouraged horse breeding especially for race horses. The Earls and Dukes imported bulls from Holland and bred their native stocks. Dutch cattle were introduced into Hereford shire that laid the foundation of the present Hereford cattle. By crossing the native and Dutch cattle and subsequent inbreeding, the British cattle were improved far beyond the best.

Abstract

This chapter provides a brief overview of the key milestones in the development of bioinformatics that would help to understand the historical context and evolution of a subject. As an interdisciplinary field, bioinformatics has grown gradually from molecular biology, with the development of various algorithms, databases, and other important tools that have helped to advance computational biology. Some important events in the history of bioinformatics might include the development of the first algorithms for sequence alignment and comparison, the creation of early databases such as GenBank and Swiss- Prot, and the development of software tools for molecular modeling and drug design. Other key milestones might include the sequencing of the first genomes, the development of high-throughput sequencing technologies, and the emergence of new areas of research such as systems biology and synthetic biology. By understanding the historical context of bioinformatics, students and researchers can gain a deeper appreciation for the current state of the field and the ongoing efforts to advance our understanding of the molecular mechanisms that underlie life.