eChapters

Histology

Cell: Structural and functional unit of an organism

M. Schleiden & Theodor Schwan – proposed cell theory

- All living being made up of cell

Tissue: Group of cell and their extracellular product organized to perform a particular function

M. Malpighii – Father of histology

A close look on three disciplines of Parasitology reveal that these are the branches where a scholar initially select them as per his basic qualifications. But while pursuing research in Parasitology, the line of demarcation becomes blurred and it is in fact combination of a group of scientists,from varied disciplines, who are able to solve any one problem; at that point, it is absurd to divide the subject as medical or veterinary or basic parasitology. In fact, these will be your interests and experiences which will decide your line of research and will determine your achievements.

B    :    Born.     
B cell, also known as a B lymphocyte      :    One of the major types of cells in the immune system. B cells can differentiate to form memory cells or antibody-forming cells. OR A type of lymphocyte derived from bone marrow stem cells that matures into an immunologically competent cell under the influence of the bursa of Fabricius in the chicken and bone marrow in nonavian species. Following interaction with antigen, it becomes a plasma cell, which synthesizes and secretes antibody molecules involved in humoral immunity.

H    :    Hour.

H    :    Planck’s constant.

H antigens, histocompatibility antigens   :    H antigens or histocompatibility antigens, are known as major histocompatibility antigens when they encode molecules that present foreign peptides to T cells and as minor H antigens when they present polymorphic self peptides to T cells. See also histocompatibility.

Diagnostic biomarkers are measurable biological molecules that provide information about physiological or pathological conditions. This chapter examines the use of metabolomics for discovering, evaluating, and validating biomarkers for disease diagnosis, prognosis, therapeutic monitoring, and personalized medicine. It discusses different types of biomarkers, metabolomic biomarkers, biological samples, analytical platforms, biomarker-discovery workflows, and statistical analysis. Applications in cancer, diabetes, cardiovascular, liver, kidney, neurological, infectious, and metabolic diseases are considered. The chapter also explains the role of metabolomics in drug discovery, toxicology, nutrition, and clinical research. Challenges involving biological variability, analytical reproducibility, data complexity, and clinical validation are addressed alongside future opportunities involving AI and multi-omics.

Modern biological systems cannot be fully understood through a single molecular layer. This chapter examines the integration of genomics, transcriptomics, proteomics, and metabolomics to obtain a comprehensive systems-level understanding of biological processes. It explains the role of each omics discipline and shows how their combined analysis can connect genetic information, gene expression, protein activity, metabolic states, and phenotypic outcomes. The chapter discusses the need for multi-omics integration, computational and network-based analysis, and systems biology workflows. Applications include disease diagnosis, precision medicine, crop improvement, stress tolerance, biotechnology, metabolic engineering, synthetic biology, and environmental research. Multi-omics integration provides improved biological interpretation, biomarker discovery, pathway prediction, and therapeutic target identification.

I. IMMUNOLOGY OF MALE REPRODUCTIVE SYSTEM

There are two basic functions of the immune surveillance of man and animals with respect to sperm immunity during spermatogenesis and fertilization process: support of the elimination of the vast majority of 'waste "spermatozoa that fail to fertilize and preservation of the tiny minority of surviving spermatozoa that are able to fertilize the oocytes. The primordial forms of spermatozoa arising in the seminiferous tubules of testes are preserved by the blood-testes barrier which is formed by sertoli cells ringing the semineferous tubules (Hunter, 1989). During maturation in the epidydimis, the spermatozoa acquire their antigenic properties. Simultaneously, the spermatozoa are coated with some proteins of seminal plasma having the immunosuppressive activity toward lymphocytes and macrophages involved in the immune reactions. The seminal plasma proteins accompany the migration of spermatozoa to the female genital tract (Matousek, 1985).

This chapter outlines fundamental molecular biology protocols essential for genomic analysis and molecular characterisation. Modern molecular biology relies heavily on precise analytical techniques for studying genetic material. Hence, this section presents a typical workflow encompassing nucleic acid extraction, amplification, and subsequent analysis. These methodologies are fundamental to various applications in molecular biology, including phylogenetic analysis, gene expression studies, and molecular diagnostics.
The chapter covers four core molecular biology and bioinformatics techniques, each building upon the previous:
1. Genomic DNA Extraction: Protocols for efficient isolation of DNA from biological samples. This encompasses cell lysis, protein denaturation, and nucleic acid purification through standard separation techniques. The quality and purity of extracted DNA significantly influences downstream applications.
2. Primer Design with Primer3: In silico design of oligonucleotide primers for PCR amplification. This section covers primer design parameters including optimal melting temperature (Tm), GC content, primer length, and considerations for avoiding secondary structures and primer-dimer formation.

Livestock has been essential for Indian agriculture since prehistoric times. Livestock is crucial for tripling farmers’ revenue, for bovines—particularly cattle and buffaloes—play a crucial role in the economy. India has the
largest number of livestock owners, with a wide variety of livestock and poultry breeds that are essential to the socioeconomic advancement of rural communities. The production of consumables and maintaining the country’s food security are inextricably related to the livestock and agricultural sectors. Numerous illnesses have a detrimental effect on the health and productivity of livestock and are highly significant economically. Livestock illnesses have negative effects on producers, costing them money in upkeep, resources, and production.
Protozoal infections are a major contributor to the global burden of infectious diseases and have a profound effect on health, society, and the economy. Nearly one-sixth of the world’s population is at risk of dying from serious diseases like malaria (Plasmodium spp.), African sleeping sickness (Trypanosoma brucei), Chagas’ disease (Trypanosoma cruzi) and various forms of cutaneous and visceral leishmaniasis (Leishmania spp.). Although the burden of protozoal diseases primarily affects tropical and subtropical regions, environmental changes and ecological modifications brought about by both natural and manmade factors have had and are likely to continue to have a significant impact on the emergence and spread of these infections in high-income nations.

Pathology is derived from Greek word (Pathos=disease + logos=study). It is study of structure and function of body in disease.

Veterinary Pathology is the study of anatomical, chemical and physiological alterations in comparison to normal due to disease in animals. Pathology has responsibility to forms a vital bridge between preclinical sciences (Anatomy, Physiology, Biochemistry) and clinical branches of medicine and surgery.

General Pathology deals with the basic alterations of tissues as a result of disease. e.g. fatty changes, thrombosis, amyloidosis, embolism, necrosis etc.

Systemic Pathology is related to the alterations in tissues/organs of a particular system. e.g. respiratory system, genital system etc.

Special Pathology is the application of the basic reactions of gene general pathology to various specific diseases.

Gross or Macroscopic Pathology is the examination of tissue without the help of a microscope.

When you are assigned with your thesis problem or some problem is puzzling you, the first step is to search the related literature ; here the term literature is used not as it is used in humanities but this means the literature related to the research work published by the earlier scientists on the topic. The searching of literature is a most important and first step in conducting research on a particular topic. This not only acquaint you with the work of other scientists who tried to solve the problem but also confirms the possibility that previous scientists might have solved that problem and yours will be a repeat attempt ; in that case you may tackle other aspects of the problem, if at all they are existing and important in present circumstances.

E    :    Reduction potential.    
Early induced responses    :    The early induced responses or early nonadaptive responses are a series of host defense responses that are triggered by infectious agents early in infection. They are distinct from innate immunity because there is an inductive phase, and from adaptive immunity in that they do not operate by clonal selection of rare antigen-specific lymphocytes.

I&D    :    Incision and drainage.     
I&E    :    Internal and external.     
I&O    :    Intake and output.     
I.P. (IP)    :    Intraperitoneal .    
I.V. (IV)    :    Intravenous.

T    :    Thymine

T    :    TH1 cells are a subset of CD4 T cells that are characterized by the cytokines they produce. They are mainly involved in activating macrophages, and are sometimes called inflammatory CD4 T cells. OR TH2 cells are a subset of CD4 T cells that are characterized by the cytokines they produce. They are mainly involved in stimulating B cells to produce antibody, and are often called helper CD4 T cells. OR The term TH3 cell has been used to describe unique cells that produce mainly transforming growth factor-â in response to antigen; they develop predominantly in the mucosal immune response to antigens that are presented orally. OR See regulatory T cells.

12.1 Assays for molecular diagnosis of Acute Myeloid Leukaemia (AML)

Acute Myeloid Leukaemia (AML), also known as Acute Myelogenous Leukaemia or Acute Myeloblastic Leukaemia or Acute Granulocytic Leukaemia or Acute non Lymphocytic Leukaemia is an aggressive type of cancer which affects blood and bone marrow. AML is a heterogeneous disorder if one considers its clinical status, therapeutic responses and overall prognosis.¹ This disease called acute because it progresses very fast and myeloid as it originates from myeloid cell line in the bone marrow.

In bone marrow blood cells are made in a controlled way. When AML occurs excess numbers of immature leukaemia cells are produced. Overproduction of leukaemia cells in bone marrow disables bone marrow to make mature white blood cells. These accumulated immature cells are unable to function properly (Inability to fight infection).

Diagnosis: Correct diagnosis is important for a successive treatment for AML. There are several tests available to diagnose AML but not all tests will be used for each person. The following tests may be used to diagnose AML.

AI-enabled livestock technologies can improve productivity, health monitoring, animal welfare and environmental performance, but they also raise significant ethical and governance concerns. This chapter examines data ownership, privacy, algorithmic bias, transparency, accountability, cybersecurity, socioeconomic inequality and animal well-being. Precision livestock systems continuously monitor animals through sensors, computer vision, machine learning and IoT networks, enabling preventive decisions and automated interventions. However, excessive dependence on algorithms may reduce human oversight and treat animals merely as data-producing units. The chapter advocates an interdisciplinary framework for responsible AI that aligns innovation with animal-welfare standards, farmer interests, social values, equitable access, regulatory requirements and long-term environmental sustainability.

This chapter explores the essential techniques used in veterinary parasitology to collect, identify, and diagnose parasitic infections. These methods are crucial for understanding general animal health, the complex relationships between parasites and their hosts and for tracking disease outbreaks, that will ultimately allow the development of effective control strategies. Whether in a research lab or a clinical setting, the techniques discussed here are widely used to detect and study parasites that impact both domestic and wild animals.
2.1 Collection of Specimens for Parasitological Examinations
Different species of parasites affects almost all parts of the host. These organisms can inhabit virtually every organ system of the host animal, from the brain and lungs to the digestive tract and skin. Therefore, a thorough examination of both living animals and post-mortem cases is essential for collecting parasites and determining cause of death (when applicable). When collecting from live animals, samples should be collected after through exanimation of the animals and following the standard procedure. The collection of correct samples, use of appropriate transport media and proper handling of specimens are crucial factors that directly influence diagnostic accuracy.
The type of specimen collected depends on the methods of identification and diagnosis. For example, diagnosis of blood parasites requires specific types of samples: peripheral blood smears for microscopic examination of hemoprotozoans, serum or plasma for ELISA and other serological tests, and unclotted whole blood for molecular diagnostic methods such as PCR and qPCR.