eChapters

Since shrimps live and grow in water, water quality has an impact on their growth and survival. Water of good quality means that the parameters influencing shrimp growth and survival rates are within the optimal range of shrimp requirements. Each water quality parameter can have a direct impact on the health of the animals. Shrimp suffer from stress and disease when exposed to improper levels of dissolved oxygen, ammonia, nitrite, or hydrogen sulphide. Water quality parameters, however, influence each other in the complex and dynamic environment of aquaculture ponds. 

The phases of green revolution and post green revolution of Indian agriculture have assured us of security. We are now producing 354 million tons of food grains and our target is to produce 550 million tons before 2050. This is really an incredible progress for any country dominating with rural and agrarian economy. As on date, the contribution of Indian agriculture to national GDP is 14.7 % but it has to support around 60% of population. While food security has been ensured for 1480 million of population, the issues of malnutrition are standing paramount. It sounds melancholic that India is also sustaining world’s highest count of hungry population close to 51% newborn babies are underweight, 60% of rural women are anaemic, millions are deprived of dedicated safe drinking water. According to FAO, between 702 and 828 million people in the world faced hunger in 2021. Health, hygiene and nutrition are organically linked to each other, in terms of calorie intake of rural women. We are still far below of international standard. Alongside, the hemoglobin level runs below the expected level to indicate that women are runningin a moderate to acute anaemic condition. Around 840 million people are malnourished from insufficient calories. According to Black et al., (2008) nutrition related factors were found to be jointly responsible for around 35% of the child fatalities and 11% of the overall global illness burden in an analysis that took into account co-exposure. Due to poor quality of drinking water, whatever available, the propagation of water born diseases has been endemic and robust. The geo-spatial distribution of hunger and malnutrition indicates that there is location to location variation, gender discrimination, and seasonal variability across the terrain of social-cultural distribution. To make India stronger and swashbuckling we need to refocus on women health, child care and removal of economic discrimination. With acute hunger, mapping, problem of chronic hunger as well, chronic hunger hasbeen reflected through seasonal sickness, broken health and psycho-somatic downfall. Sometimes, poverty has not been the only factor for malnutrition. The other factors for malnutrition can be our wrong belief system, superstition, wrong food habit, and unscientific cooking process. With this background the objectives of the studyhave been spelt out.

Toxicology is defined as the study of chemical or physical agents which interact with biologic systems to produce a response in the organisms. Toxicity is the relative ability of a substance to cause injury to biologic tissue. Given the broad range of toxicities any substance might eventually invoke in an organism, it is easy to understand the wisdom of Paracelsus (1493-1541) when he said, “All substances are poisons; there is none which is not a poison. The right dose differentiates a poison and a remedy”.

Toxicology is the study of the harmful effects of chemical compounds on biologic systems, including their properties, actions, and effects. The toxic agent is referred to as a toxicant or poison. The term toxin refers to poisons produced by a biologic source (eg, venoms, plant toxins); the redundant term biotoxin is occasionally used. Toxicosis, poisoning, and intoxication are synonymous terms for the disease produced by a toxicant. Toxicity (sometimes incorrectly used instead of poisoning) refers to the amount of a toxicant necessary to produce a detrimental effect. Hazard describes the likelihood of poisoning under conditions of use.

• General considerations

 • First hand information and constitution of a team

 • Gathering the disease information from records and the owner

 • Animal data

 • Previous illness

 • Present disease

 • Proforma for animal examination report

 • Observation of team

• Logical clinical examination of animals

 • Disease investigation kit

IoT networks and smart sensors enable continuous livestock monitoring, overcoming the delay and subjectivity associated with manual observation. This chapter reviews sensor types, communication systems, cloud and edge computing, and their applications in animal-health and behaviour tracking. It proposes a framework integrating multimodal sensors with IoT networks and machine-learning models such as CNNs and LSTMs. The system can detect abnormalities, predict health conditions and provide real-time decision support. Practical benefits include earlier intervention, improved welfare, reduced labour and more efficient production. The chapter also addresses implementation problems, costs, connectivity, data security, technical reliability and ethical considerations associated with constant digital monitoring of animals.

Reducing insecticide application to the lowest level is the motto of IPM in vegetables. Monitoring for the initial build up and timely mechanical removal of the first population is a must in vegetables. Always remove the first affected plants, by diseases like mosaic, and destroy them by burying or burning. Remove insect eggs, insect affected plant parts and adults and immature stages of insects, and destroy them every day. Do not throw them in the field. They will either come back, or pupate and attack later. During nursery stage, use wood ash, cow dung solution, and plant extracts to deter all pests. Use only low residual insecticides like Dichlorvos 1ml/l, Malathion 2ml/l, Endosulfan 2ml/l or Quinalphos 2ml/l, in spots, at the beginning of attack itself.

The cotton aphid: Aphis gossypii: Aphididae

Symptoms of Damage

Both nymphs and adults cause the damage by sucking the plant sap from shoot tips, pods and leaves. Severe infestation may result in complete drying of affected parts. Attacked leaves curl up, wither and fall. These are yellowish green or brown coloured aphids. The total life cycle from first instar nymph to adult occupies an average of 8-10days. It reproduces parthenogenetically and viviparously. The female may produce 10-30 young ones in a life span of 10-12 days. The nymphs transform into adult in 5-8 days after passing through four moults. 

Special Staining
A. Spore stain
Spores may be spherical or oval and may be central subterminal or terminal in position within the cell. Shape, size and position of the spore in the cell are useful for the identification of sporulated organisms. Spores are difficult to stain and when once stained, they are difficult to decolourize. With Gram’s stain, mature spores remain unstained bodies. Modified Ziehl-Neelsen’s method of staining will be used for the staining of spores.
Composition
a. Concentrated carbol fuchsin
b. Sulphuric acid 0.5 % solution.
c. Loeffler’s alkaline methylene blue
Materials
Old cultures of B. subtilis and Cl. Chauvoei and staining solutions.
Procedure
1. Make smears and fix over flame.
2. Stain with carbol fuchsin and steam for 3 to 4 minutes.
3. Wash with tap water.
4. Decolourize with 0.5% sulphuric acid.
5. Wash with water.
6. Counter stain with Loeffler’s methylene blue for 2 minutes.

The chief functions of Clinical Microbiological laboratory are to examine and culture specimens for microorganisms, to make accurate species identification of important isolates and to perform antibiotic susceptibility tests when indicated. These tasks will assist physicians in the diagnosis and treatment of infectious diseases.

Once the specimen is received in the laboratory, the specimens are examined visually depending on the physicians order and the nature of the specimen. Wet mounts and smears may be prepared and stained for microscopic examination. Observations may or may not be immediately reported to the physicians depending on the definitiveness of the results. Timely information may often be used to establish a presumptive diagnosis and institute a specific course of therapy. Specimens that require definitive identification of potentially pathogenic microbes are processed further. All agar plates are streaked for colony isolation; then plates and broths. All cultures are placed in an incubator with appropriate temperature and environmental conditions to maximize the growth and replication of microbes. Often a presumptive microbial identificationcan be made. A final report should be delayed while subcultures and additional test procedures are performed to identify the organisms definitively.

Preliminary Identification of Unknown Bacteria
A number of techniques may be used in the direct microscopic examination of clinical specimens to demonstrate the presence of microbes The examination of wet mounts of unstained materials by phase contrast or
dark field microscopy is useful for demonstrating motility, spirochaetes and endospores. Giemsa, Wright or acridine orange stains may be helpful in observing bacterial forms that stain poorly or that have little contrast from
back ground material.

Background
Milk somatic cells are a diverse population of cells found in milk, including epithelial cells, leukocytes (white blood cells), and macrophages. Isolating these cells from milk provides valuable insights into mammary gland health, mastitis detection, and milk quality assessment.
Several methods can be employed for milk somatic cell isolation. Among the others, centrifugation is the most common method of cell separation. Filtration, immunomagnetic separation and flow cytometry are the other methods of isolating specific cell populations.
In bovines, isolating milk somatic cells is useful in milk quality assessment, mastitis detection, and mammary gland biology research. An increased milk somatic cell count level, particularly neutrophil, indicates mammary gland inflammation. Healthy and mastitis glands can be diagnosed by analyzing the differential counting of milk somatic cells.

Background
Peripheral blood mononuclear cells (PBMCs) are a crucial immune system component. Isolating them from whole blood allows for an in-depth study of immune responses, disease mechanisms, and the development of noveltherapies. Lymphocytes, monocytes, and other different  white blood cells (WBCs) possessing circular nuclei make up the cells of PBMCs. These cells can be directly obtained from whole blood using different separating methods. PBMCs can be utilized for multiple purposes, from drug assessment to expression analysis to parentage determination.
• Toxicity assessment of novel compounds: Interaction of drugs with PBMCs can help assess the safety of compounds and set appropriate doses for safe consumption.
• Comparative analysis: In vitro assessment of diseased vs. healthy PBMCs can provide insights into affected biochemical pathways. The effects of foreign chemical compounds can also be assayed to drive future studies.
• Personalized medication: Studying PBMCs can help develop a genetic immune profile, leading to more specificity and effectiveness in personalized medicines.
• Occupational disorders: Diseases developed due to the overexposure of certain toxic compounds can also be determined by testing PBMCs in peripheral blood.

Key Points

• Animal euthanasia is the act of humanely killing animals, most commonly with injectable drugs.

• Euthanasia techniques vary by species, age, and the health status of the individual animal.

• Death must be confirmed before disposal of any animal remains.

• Animal remains must be disposed of in a legal manner that does not contaminate food sources or the environment.

Introduction

Euthanasia is the act of inducing humane death in an animal by a method that induces rapid loss of consciousness and death with a minimum of pain, discomfort, or distress. Euthanizing agents cause death by three basic mechanisms: (1) direct depression of neurons necessary for life function, (2) hypoxia, and (3) physical disruption of brain activity. Because loss of consciousness resulting from these mechanisms can occur at different rates, the suitability of a particular agent or method will depend on whether an animal experiences distress before loss of consciousness. Unconsciousness, defined as a loss of individual awareness, occurs when the brain’s ability to integrate information is blocked or disrupted. Ideally, euthanasia techniques cause rapid loss of consciousness, followed by cardiac or respiratory arrest and death.

Shoot and fruit borer : Diaphania (Margaronia) caesalis :  Pyraustidae

The shoot-and fruit-borer D.caesalis is a major pest of jackfruit in India. The larvae are reddish brown with pale brown head and thin hairs from black warts. The caterpillars bore into the shoots, buds and fruits.  Affected shoots wilt or dry up and the fruits rot and drop. The adult is brown with grey elliptical patterns on the wings.

This is an acute viral encephalitis having public health importance. It is under the genus Flavivirus and family Flaviviridae. The genus Flavivirus comprises of group of arbovirus though a few members of the genus have no known vector. The genus contains over 70 viruses of which 40 are mosquito borne, 16 are tick borne and 18 have no known vector. The type species of the genus is yellow fever virus. Although all flaviviruses are serologically relate, they can also be grouped serologically into distinct groups: dengue serological group, the JE serological group and a less serologically cohesive yellow fever virus group. The disease has been recognized in Japan since 1871 and was named Japanese B encephalitis to distinguish it from 'encephalitis A' (encephalitis lethargica, Von economo's disease) which was then prevalent. The virus was first isolated in Japan during an epidemic in 1935.

Etiology: JE virus is under the genus Flavivirus and family Flaviviridae. The genome is about 11 kb which encodes 3 structural proteins (C, capsid protein, PrM the membrane precursor protein that is cleaved proteolytically by a cellular protease to form the M protein in mature virions, and E, envelope protein) and 7 non-structural (NS) protein (NS1, NS2a, NS2b, NS3, NS4a, NS4b, NS5). The Eglycoprotein is the most immunologically important protein. The Japanese encephalitis serological group of flaviviruses comprises eight virus species and two subtype viruses with a geographic range encompassing all continents except Antarctica. The major virus species and their geographic range are as follows: the Japanese encephalitis virus ( JEV) in eastern, southern and southeastern Asia, Papua New Guinea and the Torres Strait of northern Australia; the West Nile virus (WNV) in Africa, southern and central Europe, India, the Middle East and North America and as Kunjin virus ( a subtype of WNV) in Australia and Papua New Guinea; the Murray Valley encephalitis virus (MVEV) in Australia, Papua New Guinea and the western Indonesian archipelago and the St. Louis encephalitis virus (SLEV) in North and South America. The other minor members of the group are Usutu (USUV), Koutango and Yaounde viruses in Africa; Cacipacore virus in South America and Alfuy, a subtype of MVEV, in Australia.

Bud-worm : Hendecasis duplifascialis : Pyraustidae

This pest is serious on J.sambac. The larvae are dark green with black head which bores into immature buds.  They make a hole on the buds, and feed inside, leaving behind faecal pellets entangled in few silk strands. Webbing is seen in severe infestation and pupation takes place in soil.

Klebsiella pneumoniae (also known as Friedlander’s bacillus) is a Gramnegative, non-motile, encapsulated, lactose fermenting, facultative anaerobic, rod shaped bacterium found in the normal flora of the mouth, skin, and intestines.
Klebsiella spp. are Gram-negative, nonmotile, usually encapsulated rod-shaped bacteria, belonging to the family Enterobacteriaceae. These bacteria produce lysine decarboxylase but not ornithine decarboxylase and are generally positive in the Voges-Proskauer test. Members of the Enterobacteriaceae family are generally facultative anaerobic, and range from 0.3 to 1.0 μm in width and 0.6
to 6.0 μm in length. Klebsiella spp. often occurs in mucoid colonies. The genus consists of 77 capsular antigens (K antigens), leading to different serogroups. Morphology of Klebsiella pneumoniae (K. pneumoniae)
• Shape – Klebsiella pneumoniae is a short, plump, straight rod shape (bacillus) bacterium.
• Size – The size of Klebsiella pneumoniae is about 1–2 μm × 0.5–0.8 μm (micrometer).
• Arrangement Of Cells – K. pneumoniae is arranged singly, in pairs, or in short chains and sometimes in clusters.
• Motility – Klebsiella pneumoniae is a non-motile bacterium.
• Flagella – K. pneumoniae is a non-flagellated bacterium.
• Spores – The Klebsiella pneumoniae is a non–sporing bacterium.
• Capsule – Capsules are present in Klebsiella pneumoniae which can easily be demonstrated using India ink preparation, appear as a clear halo in a dark background.
• Gram Staining Reaction – Klebsiella pneumoniae is a Gram -ve (Negative) bacterium.

A. Intestinal protozoa Fresh faeces must be used as a sample. The sample must be examined immediately and without refrigeration. Methods of examination 1. Direct smear examination A thin smear of faeces mixed with either water or normal saline (recommended for Trophozoites since they stay intact and motile longer). Select blood-tinged mucus or tiny tissue bits if the faeces are dysenteric. One to two percent of an aqueous eosin solution can be used in place of saline or water, but the oocyst still resist the stain. The viability is examined using the eosin solution. It is possible to employ an iodine solution (which kills protozoa), which allows for the identification and differentiation of the protozoa. It is possible

Introduction
According to the U.S. Food and Drug Administration (FDA), Good Laboratory Practices (GLP) is a quality system that ensures the nonclinical safety studies are appropriately designed, conducted, and documented to generate reliable data. The laboratory techniques are defined as the processes and practices that are recommended for equipment use in the laboratory, while laboratory methods are based on established scientific principles involving biology, chemistry, and physics, and encompass all aspects of the clinical laboratory from testing the amount of cholesterol in blood to analysing DNA to growing microscopic organisms that may be causing an infection. One of the most significant parts of laboratory techniques and laboratory methods is the proper validation of the equipments (old or new equipments) as well as all the testing procedures/ methods (established or newly developed methods). Analytical method validation is a critical process to ensure the quality and safety of products. The objective of the validation of an analytical method is to demonstrate that it is suitable for its intended purpose; the results are authentic and universally acceptable. An analytical method is suitably well considered when the results generated through different method are consistent, reproducible, and thus, reliable.
The validation is required when
• A new method has been developed
• Revision of established method
• Use of established methods in different laboratories and different analysts, etc.
• Comparison of methods required
• When quality control indicates method changes

Lameness is an important health and production problem in dairy animals because it affects mobility, feeding behaviour, milk production, reproduction and welfare. This chapter focuses on practical evaluation of lameness and identification of the affected limb and underlying lesion. Examination includes observation during standing and walking, assessment of weight bearing, limb manipulation and examination of the foot. Washing the foot, inspecting the interdigital area, coronary band and heel, and using hoof testers can help localize pain. Recognition of abnormal gait and foot lesions enables early intervention and management. Effective lameness assessment is therefore an essential component of dairy herd health.