eChapters

Diagnostic Symptoms

• Practically all above ground parts are affected, but stalks are the main targets of stack.

• Spindle leaves (third or fourth) starts drying.

• Further stalks becomes discolored and hollow.

Diagnostic Symptom

• Circular to oval, dark brown to black spots appear on the leaves.The spots enlarge into round to irregular spots with concentric rings and coalesce causing blighting and withering of leaves.

• These are surrounded by chlorotic zone with grey white necrotic center.

Introduction

Tomato scientifically known as Solanum lycopersicum L. is a widely cultivated and consumed fruit that is often mistaken for a vegetable due to its culinary uses. Belonging to the Solanaceae family, tomatoes are native to western South America with their domestication dating back to ancient civilizations in Mesoamerica. Tomatoes are prized for their vibrant red colour, juicy flesh, and rich, slightly sweet f lavour. They are a versatile ingredient used in a wide range of culinary dishes, from salads and sauces to soups and sandwiches. Tomatoes are a significant source of essential nutrients, including vitamin C, vitamin K, potassium, and folate. Additionally, they contain the antioxidant lycopene, which is believed to have various health benefits.

Leaf spot

Colletotrichum capsici

Diagnostic Symptoms

• Initially oblong brown spots having about 4-5 cm in length and 2-3 cm in width with grey centres surrounded with yellow hallo are found on the leaves .

Important diseases of vegetable crops

1. Damping off: (Phytophthora parasitica, Pythium sp. Rhizoctomia solani):This is a disease of the seedlings at the nursery stage. Due to the attack of this fungus seedlings rot at the ground level and collaps.

Rust

The rust of wheat has been studied more than any other disease in the world. In India, K.C Mehta and his associates studied this disease with exemplary zeal. Three rusts of wheat are known. These are Black stem rust, caused by Puccinia graminis tritici, Brown rust (leaf rust), caused by Puccinia recondita, and Yellow rust, caused by P? striiformis. Brown and yellow rusts cause more damage thant the black rust, because of early appearance in the season.

Distillation of rose oil and rose water:

For distillation of rose oil and rose water initially the fresh rose flower are hydro distilled. The oil and water are collected together. The oil which floats upon the water is separated by decantation get oil directly, while the water is re-distillated. The oil obtained from re-distillation is called recovered oil or water oil. The direct oil and water oil are then combined to make the commercial rose oil.

The water obtained from the second re-distillation step is the commercial rose water

ABSTRACT

The genus Aconitum is in the limelight of the current scenario of the pharmacopeia and has became the centre of attention in the field of herbal medicines, as is manifested with various biological and pharmacological cores which make the genus most imperative. For vast decades some species of the genus Aconitum and its derivatives were considered as vizulently fatal but were liquidated as intact drug elites through traditional as well as modern system of medicine. The retrospection of the validated information in account of the genus Aconitum represent a pioneering approach to corroborate the scientific studies on almost everyaspect of the herbal genusAconitum, as a number of species belonging to this genus has been enlisted in the Red Data Book of IUCN which have been renowned for their medicinal benefits in various systems of medicine. The tubers some species of Aconitum contain lethal diterpene alkaloids such as aconitine, mesaconitine, and hypaconitine, which easily can be directed into screened harmless alkaloids such as benzoylaconine, aconine, and pyroaconine by heating or alkaline treatment. Currently, the processed tubers are widely and safely practiced for the remedyof pain, neuronal disorders, inflammation, and rheumatism and have a huge therapeutic index for curing ailments like hysteria, throat infection, dyspepsia, abdominal pain, diabetes and also as a cardiac depressant in massive arterial tension of cardiac origin. An important component extracted from some species of Aconitum, Lycaconitine has been found to be effective against multi-drug resistant cancers. The di-terpenoid alkaloids of aconite source and their increasing demand for the active compounds used in different systems of medicine has led to overharvesting of the tubers, resulting in rapid depletion of the natural stocks of this valuable plant. As a consequence, the genus is now on the list of rare and threatened species. Since the commercial demand of this important medicinal plant is very high and hence needs to be conserved as the species density of this genus has been threatned due to many factors. As such diverse efficient and standardized protocols for its regeneration like micropropagation, somatic embryogenesis and some other conventional efforts like storage of seeds as a means of ex-situ conservation must be attributed on the aspects of conservationof genusAconitum. The exploitation of population genetic diversity will provide useful information for the biological conservation of these esteemed species of Aconitum in the regions . Since a complete revision of the genus Aconitum in the region has not yet been carried out and the high level of endemism and a lack of relevant information of the genus Aconitum have made its various scientific studies a very interesting object. The scientific and systematic information about the genus Aconitum generated demands validation as only a little attention has been done on its various aspects from cultivation, conservation, phytochemistry and pharmacological evaluation to the molecular characterization. Consequently species specific measures are needed and a lot of important attributes has to be assigned to the species of this genus which will ultimately help to ensure simultaneously both conservation as well as sustainability in raw material production of the genus.

The arid zone of India covers about 12% of the country’s geographical area and occupies over 31.7 mha of hot desert and about 7 m ha under cold desert. The arid regions of Rajasthan, Gujarat, Punjab and Haryana together constitute the Great Indian Desert known as Thar Desert that accounts for 89.6% of hot arid regions of India. In Gujarat, 6.22 m ha area is under arid zone which constitute 19.6% of the arid area of country (Fig 1). In Gujarat, eight districts fall under arid zone, namely, Kachchh (100% of district area), Jamnagar (80%), Surendranagar (29%), Junagadh (20%), Banaskantha (18%), Mehsana (7%), Ahmedabad (6%) and Rajkot 6%).

1. Introduction

India, as a party to the Convention on Biological Diversity (CBD), has obliged to document a whole range of organism diversity within her territorial boundaries, make all attempts to conserve these bio-resources and monitor the efficacy of the conservation measures adopted. With its diverse ecological conditions and unique geographical location, Indian landmass supports rich diversity of algal flora. However, this algal wealth needs to be systematically surveyed and documented from all possible habitats. Ecological patterns emerged from recent studies within India are assessed with the identification of knowledge gaps and conservation implications in algal systematics.

During last one decade, great advances have been made in the field of Algology/Phycology throughout the world. Over the years algae has attained a greater reputation and popularity because of its economic importance, particularly as food, for commercial products, water contamination, toxin production, sewage oxidation, municipal water purification in fisheries and above all for the study of fundamental scientific information. But before the algae put in to such important use, it is imperative to have a baseline data about the material in question. Without knowing the status of algal resources of any area one cannot have projections for their utilization or gain knowledge of their ecological role and functions. The taxonomy of algae is, therefore, a prerequisite for all applied fields of algae apart from academic interest. Recent global surveys have revealed that there is lack of knowledge about fresh water algal diversity of tropical countries including India.

1. Introduction

The gymnosperms constitute a distinct subdivision of spermatophytes, the seed bearing plants. The term ‘gymnosperm’ is derived from Greek words, gymnos, naked and sperma, seed, which indicates that these are naked-seeded plants, i.e., those in which the seeds are not enclosed within the fruits but are borne freely exposed on an open carpel. In contrast in the angiosperms the seeds are enclosed within a closed carpel (ovary). The first known use of the term gymnosperm was given by Theophrastus in 300 BC in his book “Enquiry into Plants” to describe “plants with unprotected seeds”. Goebel (1905) rightly described gymnosperms as “Phanerogams without ovary”. The Scottish botanist, Robert Brown in 1825 first distinguished gymnosperms from angiosperms. At one time they were considered to be single class of seed plants, called Gymnospermae, but taxonomists are now tend to recognise four distinct divisions of extant gymnospermous plants - coniferophyta (Pinophyta), Cycadophyta, Ginkgophyta and Gnetophyta. Geological history reveals that all divisions of gymnosperms have been distinct groups since their origin.

Among the gymnosperms are plants with stems that may barely project above the ground and others develop into the largest trees on the earth. The extant gymnosperms are a small group of plants comprising ca. 1026 species belonging to 83 genera and 12 families (Christenhusz et al. 2011). They are distributed throughout the world, with extensive latitudinal and longitudinal ranges. Economically, gymnosperms are of outstanding value, fulfilling the greater proportion of our timber as well as resin requirements. They are also the dominant forest makers of the world and in addition they play a leading role in the preservation of the environment (Sahni 1990). By far the largest group of living gymnosperms is the conifers (pines, cypresses and relatives), followed by cycads and Gnetales (Gnetum, Ephedra and Welwitschia).

Turmeric (Curcuma longa L.) is a tropical herbaceous plant extensively cultivated in India, Sri Lanka, parts of China and Pakistan.  Country of origin is not known with certainity, it is either of Chineese or Indian origin. India ranks first in area (1.49 lakh ha.) and production (5.27 lakh tonnes.) in the world and it is grown in most of the states in the country.  Major turmeric growing states are Andhra Pradesh (56,000 ha.), Orissa (23,000 ha.), Tamilnadu (17,000 ha.), Assam (12,000 ha.), West Bengal (11,000 ha.) Maharashtra (6,000 ha.)  Karnataka (6,000 ha.) and Kerala (3,000 ha.).  Andhra Pradesh ranks first in area and production in the country. Area under this crop is increasing in North Eastern States.

Turmeric belongs to family Zingiberaceae and genus Curcuma. Genus Curcuma has 42 species, of which Curcuma longa is extensively cultivated for culinary purposes, Curcuma aromatica for flavour and recently Curcuma amada (mango ginger) for preparation of chutneys. Turmeric is mainly cultivated for under ground rhizomes, rich in curcumin. Turmeric is traditionally used for medicinal, religious, culinary purposes and also as a cosmetic and dye (Shah 1997). Recent reports in controlling human cancer has given renewed interest on the crop. In Ayurveda, turmeric is regarded as aromatic, a stimulant tonic, carminative and anti helminthic. Essential oil of turmeric is antiseptic and is used in treating gall stones and gall complaints (Pruthi 1976).

ABSTRACT

The current paper discusses the diversity, distribution and commercial importance of Indian Magnolias. Globally, these species are found in tropical, subtropical and temperate forests of southeastern Asia and tropical America. In India, there are 25 species of Magnolias and most of them are distributed in Northeast India, with highest number in Assam. Of all the species, two (Magnolia gustavii and M. pleiocarpa) are critically endangered, one (M. pealiana) endangered, two (M. manii and M. nilagirica) vulnerable, nine least concern and ten data deficient at global level. The highly threatened nature of most of the magnolias species calls for their immediate conservation and protection measures. Members of this genus are known to be rich in a wide variety of biologically active compounds including alkaloids, flavonoids, lignans, neolignans and terpenoids. Many of the species have been found to possess potent procognitive activity, anti-oxidative, anti-microbial, anti-inflammatory, anti-angiogenic, diuretic, anti-ulcer, analgesic, anti-helmintholytic, and anti-cancer activities. The species have huge economic potential and are used for a number of purposes including ornamental, medicinal, culinary, timber and joinery works.

Abstract

Lianas are slightly lesser known angiosperms, grows typically in the form of climbing vines mostly in tropical and subtropical forests. Such plants are characterized by scandent thick stems, woody stem in nature and vary in shape and size. They depend on supports in the form of trees, fence and usually climb upward towards the sunlight as they needed for their survival. Keeping the importance of lianas in forests and household, this study was conducted to document the liana angiosperms growing in Western Himalaya along with their medicinal potential for human and animals. This study reveals a total 64 lianas species belonging to 24 families recorded from Jammu and Kashmir, Ladakh, Uttarakhand, Himachal Pradesh and Punjab. This investigation also provided with medicinal potential of these species, which is used as ethnomedicine by local people living in the interior regions of hills and mountains of Himalaya. In this communication, we highlight lianas as an example of an underestimated forest element that, on the one hand, is a key component in and around forests. This study also helps in conservation of endangered liana species in Himalaya.

1. Introduction

Fungi are ubiquitously present in air, water, soil and organisms, or on organism surfaces. They are a group of eukaryotic system that are of great applied and scientific interest to common man, microbiologists, agriculturists and industrialists. They are a diverse group of organisms with respect to taxonomy, size, morphological appearance, mode of nutrition and reproduction. Fungi are eukaryotic spore bearing protists that lack chlorophyll. Fungi comprise the molds and yeasts. Yeasts are usually unicellular measuring only several microns in diameter, whereas molds are filamentous and multicellular which may grow up to several meters in diameter like the extremely large polypores. Fungi generally reproduce both sexually and asexually (Gow and Gadd 1995).

Although it is not easy to define fungi, biologists currently use the term “Fungus” to include nucleated, spore bearing, achlorophyllous organisms with absorptive nutrition which generally reproduce sexually and asexually, and whose filamentous branched somatic structures are typically surrounded by cell walls containing cellulose of chitin or both. A feature which all fungi have in common is their mode of nutrition. Like animals, fungi are heterotrophic organisms, which must consume preformed organic matter. They may live as saprophyte or parasites. They are of great economic importance to man and play an important role in the disintegration of organic matter and affect us directly by destroying food, fabric, leather and other commercial goods. They are responsible for a large number of diseases of plants, animals and man.

Horticulture is a wide field and includes a great variety and diversity of crops. In general, these crops are classified as follows:

1. Crops grown for the food and/or vitamin and mineral content, for e.g., apple and sweet potato.

2. Crops grown for their beverage properties, for e.g., tea and coffee.

3. Crops grown to beautify the environment, for e.g., the grasses of the well planned lawn.

4. Crops grown to express sentiments, for e.g., cut roses, jasmine.

5. Crops grown for perfume for e.g., rose, jasmine.

6. Crops grown for spices for e.g., pepper, nutmeg.

Delineating species boundaries correctly and also identifying species are crucial to the discovery of life’s diversity because it determines whether different individual organisms are members of the same entity or not (Dayrat, 2005). The identification of species depends on the knowledge held by taxonomists whose work cannot cover all taxon identification requested by non-specialists. To deal with these difficulties, the ‘DNA Barcode of Life’ project aims to develop a standardized, rapid and inexpensive species identification method accessible to non-taxonomists.

DNA barcoding is a technique in which species identification is performed by determining and comparing the sequences of several hundred base pairs of nucleotides from a small fragment of an identified gene, with the aim of contributing to a wide range of ecological and conservation studies in which traditional taxonomic identification is not practical (Krishnamurthy and Francis, 2012). The two main ambitions of DNA barcoding are to assign unknown specimens to species and to enhance the discovery of new species and facilitate identification, particularly in cryptic, microscopic and other organisms with complex or inaccessible morphology (Hebert et al., 2003a). Apart from these, identification of species previously defined by other criteria to also is an objective of barcoding. Another major objective could be the definition of operational units for ecological studies. This may also be used for forensic purposes by linking the specimens with already identified databases.

ABSTRACT

DNA fingerprinting is increasingly being used for identification of varieties, quantification of similarity between varieties and study of genetic diversity available in the population.

This is all the more important in crops where morphological variability is less or one variety is known by different names or different varieties are known by same name.

DNA fingerprinting using RAPD method has been standardized for tapioca. Dellaporta method has been used for extraction of DNA and amplification was done following William’s method. This technique has been used for molecular characterisation of accessions and identification of duplicates in the germplasm maintained at Central Tuber Crops Research Institute, Thiruvananthapuram. This technology has been extended for DNA fingerprinting of released varieties and also some of the elite breeding lines.

Eleven varieties released from the institute were fingerprinted using a few primers, which showed high polymorphism in tapioca. One single primer gave distinct banding pattern for all the 11 varieties and it was capable of earmarking each variety.

Individual variety was finger printed for 20 different primers and the results were documented. This technique is being extended to promising land races as well. DNA fingerprinting will be useful for protecting Plant Breeders’ Right as well as Farmers’ Right in the new Patent Regime.

Apoptosis is triggered by extrinsic and intrinsic stimuli as radiation, oxidative stress and genotoxic chemicals. It is defined by characteristic changes in the nucleus morphology including chromatin condensation and fragmentation, overall cell shrinkage/rounding and formation of apoptotic cell bodies. Among the many markers of apoptosis, DNA fragmentation is considered a hallmark. The DNA ladder assay described here is a simple, sensitive, cost-effective and rapid method for estimating apoptosis in cells.

Isolation of Genomic DNA

Genomic DNA from primary cells culture of PMNC and splenocytes of rats is isolated by using standard phenol-chloroform DNA isolation protocol of Sambrook and Russel (2001) as described below:

1. Preparation of primary cells culture of different cells, namely-PBMNCs, thymocytes and splenocytes form Wistar rats and viability checked by trypan blue dye exclusion test.

2. 106 cells/ml of primary cell culture is used and seeded in 24 well culture plates containing along with treatment with xenobiotics at different µM concentration.

3. Cell culture plates are incubated in CO2 incubator at 37°C with 5% CO2 for 12 hrs.

4. The cells are collected in 1.5 ml of micro centrifuge tube and centrifuged at 3200 rpm for 10 min at 4°C; supernatant is discarded and pellet is washed with PBS (pH 7.2).

5. DNA extraction buffer (500 µl/tube) is added in tubes. Gently tap to disperse the cell pellet in extraction buffer and keep in water bath for 1.0 hr at 37 °C (it is to ensure that pellet is completely suspended so that cells are accessible to SDS and Proteinase K).

6. 10 % SDS is added (20 µl/ml) to cell suspension and the tubes are gently mixed by inverting the tube. The contents of tube become viscous which indicates lysis of cells. After that sample is handled gently from onward to avoid shearing of DNA.

7. Proteinase K (15 µl) of 20 mg Proteinase K/ml of buffer is added in tubes in two pulse i.e. half the requirement is added to tube in 1st pulse, mixed gently end to end and kept in water bath at 50°C. After 3-4 hrs, the second pulse of the remaining amount of Proteinase K is added and tubes are incubated at 50°C overnight.

8. Equal volume of equilibrated phenol (Tris saturated phenol pH> 7.8 ) is added in the tubes next day morning. Mix the contents of tube gently by inverting the tube for 15 min till a light coffee coloured uniform solution without any balls of phenol is formed and then centrifuge at 3400 rpm for 15 min.

ABSTRACT

The process of developing new crop varieties involves many steps and takes several years. In recent times, biotechnological advances have helped in reducing these considerably. Apart from the techniques of haploid culture and genetic engineering, one of the tools which is making it easier for scientists to select plant traits and develop new varieties is the use of molecular markers. Molecular markers can be used for (a) characterization of germplasm (b) varietal identification and clonal fidelity testing (c) assessment of genetic diversity (d) validation of genetic relationships and (e) marker- assisted selection. These have widespread applications in management of genetic resources as well as in breeding programmes. Marker-assisted selection has practically revolutionized breeding programmes. Traditionally, plant breeders have selected plants based on their visible or measurable traits called the phenotype. But this process can be difficult especially in the case of multigenic or quantitative traits. Molecular markers can be used to trace linkages with traits of importance. In the area of horticulture, this is a very useful tool in tree breeding, where the breeder has to wait for several years for phenotypic expression of the desired trait. A number of DNA marker technologies are now available and rapid advances are being made in the development of more sensitive marker technologies. The techniques involved, the various applications of DNA marker technologies in horticultural crops and future perspectives in the national context have been discussed.