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ABSTRACT

The study was conducted to fingerprint and to analyze genetic diversity among 20 genotypes. of Psidium guajava and two species P. friedrichsthalianum and P. cattleianum using random amplified polymorphic DNA. Genomic DNA was isolated using modified CTAB method and polymerase chain reaction was carried out using standard protocols. In all 41 primers were used, 39 of which amplified 376 alleles with 347 polymorphic alleles. All the primers discriminated between two and more genotypes. Primers produced 2-16 alleles. The size of amplified DNA alleles ranged from 0.12-2.2 kilobase pairs. Polymorphic index content value was found to be maximum for primer OPB-12 (0.916). In the dendrogram all the 22 genotypes were grouped into two major clusters. Cluster 1 comprised of Spear Acid, Apple Colour and P. friedrichsthalianum, while Cluster 2 constituted rest of the 19 genotypes. Thus, RAPD markers detected a high level of polymorphism and can be used for breeding of improved guava varieties.

Inbreeding

Inbreeding means the mating together of individuals that are related to each other by ancestry. This may be defined as any system of mating that will lead to an increase in homozygosity. Selfing is the most intense form of inbreeding which provides the most rapid approach to homozygosity. When selfing is not possible, full-sib and half-sib mating are used to do inbreeding. The progeny of selfed plant is symbolized by Sj and the selfed progeny of the Sj by S₂ and so on. Occasionally symbol  is used to designate selfed seed. The effects of inbreeding are as follows:

ABSTRACT

An effort was made to characterize twelve ber genotypes using RAPD markers. Of the twenty random decamer primers tested, 17 generated polymorphic bands, while rest of the primers showed monomorphic bands. The primers that amplified all the 12 genotypes were OPC-20, OPD-1, OPD-3 and OPD-4. The size of amplified DNA fragments varied from 0.56-4.26 kilobase pair. In total, 109 bands were obtained, of which 85 bands were polymorphic, while 24 bands were monomorphic. For the cultivars tested between 2-9 bands were obtained for each primer with an average of 5.45 bands per primer. The highest number of bands (9) were generated by OPA-4 and OPD-3. With un-weighted group method using arithmetic mean (UPGMA) cluster analysis, the twelve ber genotypes fell into four major clusters. The pair wise dissimilarities of ber genotypes showed that genotypes G-9 and G-8 were close to each other. Maximum dissimilarity was observed between the genotypes G-8 and G-12.

ABSTRACT

The discovery of polymerase chain reaction method of amplification of DNA is an important milestone in molecular genetics and used for multiple purpose such as construction of linkage maps, marker saturation of specific genome regions, analysis of genetic diversity, molecular phylogeny and cultivar identifications (Williams et al; 1990, Demeke, Adams and Chibbar; 1992, Welsh and Maclelland; 1990;, Obara-Okeyo and Kako; 1998, Sawhoon Lin et al; 1998 and Grunger et al; 1998.). 15 species of three morphologically distinct groups of Orchids belonging to the subfamily Epidendroideae and tribe Dendroebieae and Cymbideae were studied using random amplified polymorphic DNA (RAPD) technique. Genetic variability and relation between these 3 genera and 15 species were estimated based on band sharing and cluster analysis. A total of 227 distinct major RAPD bands of which 97% were polymorphic were generated from 15 arbitrary primers. The number of bands generated per primer ranged from 3 (Primer A-10) to 22 (Primer K-10 and N-17) with a mean of 14.8 bands per primer. Out of 227 bands generated 222 bands (97.8%) where polymorphic while only 5 bands were monomorphic. The primer resolving power was found to range between 2.00 (prime A-10) and 13.38 (primer k-10) when all the species were studied were taken into account. The molecular analysis grouped all the species into 5 groups. The polymorphic patterns generated by RAPD profiles showed different degrees of genetic relationship among the species studied and the RAPD marker were found to be an useful tool for detecting genetic variation within the species of three important genera of Orchids.

Male sterility is a condition in plants whereby the anthers or pollen are nonfunctional. The condition may manifest most commonly as absence of pollen or extreme scarcity of pollen, severe malformation or absence of flowers or stamens, or failure of pollen to dehisce. Just like self-incompatibility, male sterility enforces cross-pollination. Similarly, it can be exploited as a tool to eliminate the need for emasculation and for hybrid seed production on commercial scale in field and vegetable crops. There are three basic kinds of male sterility based on the origin of the abnormality related to functional pollen grain.

Soil is the main growing medium. Natural as well as synthetic substitutes to soils are cropping up. Under greenhouse cultivation growing medium is generally top soil as used in open field/traditional farming. The practices of soil preparation for planting crops are more or less same as under open field. Generally, crops are planted on raise beds. As under open conventional farming soil preparation are made as per the crops or their varieties/hybrids to be grown. To enrich the soil with nutrients soil is tested for its physical and chemical properties and amended accordingly keeping in view the crop requirement. The soil composition is checked with each crop cycle and amended as per requirement of next crop. To avoid the harmful microbes and insects build up in the soil it is advisable to solarize or fumigate the greenhouse soil each year during hottest month of the year. Soil solarisation is an environment friendly soil pathogen management method and practiced widely in north India.

Soil Solarisation

Soil solarisation is an environment friendly method of using solar thermal power for controlling pests such as soil borne plant pathogens including fungi, bacteria, nematodes, and insect and mite pests along with weed seeds and seedlings in the moist soil by mulching the soil usually with a transparent polyethylene cover, to trap solar energy in greenhouses. It may also be described as a method of decontaminating soil or soil disinfestation using sunlight or solar thermal power. This energy/temperature causes desirable physical, chemical, and biological changes in the soil.

Precision Farming

Precision farming is a concept of proper crop management based on the observation, technology, measurement and response during inter and intra field variability in crops. It is also known as satellite farming or site specific crop management (SSCM).It is an application of right things, in right place, in the right way and at the right time. It has three main requirements viz. first identify various field location, second capture, interpret and analyzed the data in a proper scale & frequency and third, adjust the input with farming practices for efficient economic yields. There are 17 Precision Farming Development Centers (PFDC) located in different agro-climatic zones of India. It is mostly exist in SAUS, ICAR Institute and IIT Kharagpur. 

Crop Domestication

Domestication can be loosely defined as the process of bringing of a wild species under the management of man. Domestication is the process by which genetic changes (or shifts) in wild plants are brought about through a selection process imposed by humans. Because of the role of humans, the process results in characteristics that are beneficial to humans but some that would be disadvantageous for plants in their natural habitats. It is an evolutionary process in which selection (both natural (frost tolerance) and artificial (large attractive fruits)) operates to change plants genetically, morphologically, and physiologically. 

ABSTRACT

Genetic variability was assessed among twenty five distinct drumstick (Moringa oleifera Lam.) landraces using PCR based random amplified polymorphic DNA (RAPD) markers. Genomic DNA extracted from tender leaves was used for RAPD analysis. Thirty five primers were screened and based on the number of bands three primers were selected. The primers produced 34 bands, of which 58 % (20 bands) were polymorphic. The data were analysed using NTSYS pc 2.1 software. The similarity matrix constructed using Jaccard’s coefficient method was subjected to cluster analysis using UPGMA (Unweighted Pair Group Method with Arithmetic Mean) and dendrogram was generated. The pair wise coefficient values in the genetic similarity matrix among the landraces varied between 0.28 and 1.00. The dendrogram based on the matrix separated the landraces with distinct morphological characters and it was noted that the cluster formation was not fully in agreement with the geographical location. The study showed the use of RAPD markers in detecting genetic variability present among the drumstick landraces studied.

Broadly and conceptually breeding methods can be classified into four groups. These are:

• Selection breeding
• Combination breeding
• Hybrid breeding
• Special breeding techniques

There are fluid transitions and similarities between the individual groups of breeding methods. Selection not only takes place in the group termed selection breeding but also in other groups. In breeding varieties by combination, new variation is generated by crossing genetically different parents followed by application of various selection methods and ultimately development of a new recombinant type pure-line. In hybrid breeding, inbred lines of different genetic constitution are produced by selfing, pair crossing and other methods and from these best lines are selected and new hybrids are developed. In addition, breeding methods can also be classified according to other criteria. For example, breeding methods have also been classified according to the manner of propagation of the varieties. These are:

ABSTRACT

There is a wide variability in the contents of the commercially important chemical compounds of Centella asiatica depending on the source / ecotypes of the plants. The glycosides found in Indian plants include brahmoside, brahminoside and minor amounts of asiaticosides, which vary in their relative contents depending on the ecotypes. An RAPD marker assisted study of ten accessions, collected from different geographical locations of Kerala, viz., Parumala (Kottayam District), Kottayam, Nagercoil (Tamil Nadu), Mananthala (Trivandrum District), Vlathankara (Trivandrum District), Ponmudi (High range, Trivandrum District), Angamaly (Ernakulam District), Punalur (Kollam district), Pattambi (Palakkad district) and Calicut, was conducted. DNA amplification of the accessions was studied using forty decamer primers, involving 43 cycles. Based on the number of bands four primers were selected. The least similarity coefficient of 0.71 was shown by the Pattambi accession, which formed a separate cluster with all other accessions. Nagercoil and Ponmudi accessions showed the highest similarity coefficient of 0.88 with each other.

The variety of greenhouses and greenhouse material, equipment and accessories are so many. However, there are certain basic materials that essential in almost all types of green houses. These are

Structural framing materials

Such materialsinclude low maintenance non-heat conducting timber; strong and durable galvanized steel; or light, low-maintenance and sturdy aluminium alloys. Though plastic pipe frames are usable, they are not very strong to withstand snow load or strong wind sheering forces. What one should choose as the framing material would be determined by the material one wishes to use as glazing, his budget and the permanence of the structure one desires. Aluminium is a popular material for greenhouse framework because it is relatively lightweight, rustproof, affordable and easy to assemble. The downside is that it is not a good insulating material and in very cold weather, heat loss from the metal frame could inflate your heating bill. Also, you would need to look for sturdy frames if your greenhouse is located in an area that experiences high winds. Condensation could also occur on an aluminium frame. Wooden structural frameworks for garden greenhouses are also a popular choice for its aesthetic value, natural feel and the ’warmth’ it exudes. It is an easy material to work with especially if you are not using a greenhouse kit for building. Some greenhouse owners would settle for nothing else as they believe it is the only material that complements the natural beauty of plants inside the greenhouse! Wood is a good insulating material so it will not allow heat loss in cold weather. Reinforced wood has superior strength and has an excellent load bearing capacity. Being a natural material, it has the potential to develop mildew or disease and offer a haven to tiny pests. So, when you choose wood to build the framework of your greenhouse, be sure that you pick a high quality hardy wood such as redwood, cypress or cedar. Also, treat wood with non-hazardous chemicals so that your plants are not adversely affected. The preservatives used for wooden greenhouse frames should be pressure treated, salt type or copper naphthenate. Copper naphthenate is a general use preservative used for pressure treating utility poles and timber. It is known to be very effective in preventing mould, mildew and dry rot. It works very well against wood-damaging fungi and insect pests. Pentachlorophenol is a restricted use wood preservative and is toxic to plants and humans. It is not available to the general public and poles or timber treated with it are not suitable for use in a greenhouse. PVC pipe can also be used as support for small greenhouses that are to be covered with polyethylene, but PVC requires additional support to withstand strong winds. Being flexible, PVC can be used particularly well in hoop houses. Though it has the advantage of offering insulation and, if UV treated, are long-lasting, they are not good at bearing the load of hanging baskets and shelving to any appreciable degree. PVC that is treated to be resistant to ultraviolet radiation is also known as UPVC.

Mass selection is a form of selection in which individual plants are selected phenotypically and the next generation propagated from the aggregate of their seed. It is applicable to both self and cross-pollinated crops. The obvious first step in the improvement of self-pollinated variety is the elimination of undesirable types. This may be achieved by simply roguing them as the variety grows in the field. Sometimes, this is called as negative selection. Another approach is to tag desirable types and to harvest only those at maturity. This is called as positive selection. Either way, results are similar. The best plants in the variety are identified and bulked. A refinement of mass selection is to harvest the best plants separately and to grow them as pure lines for comparison. Only those pure lines that are similar and superior are bulked as an improvement of an established variety. 

1. SEED FORTIFICATION

It is process of enriching the seeds with bioactive chemicals for improving the germination and seedling vigour. To the known volume of seeds, one third volume of the nutrient solution is added and allowed to imbibe for short duration. The imbibed seeds should be dried under shade. The fortification treatments recommended for different crops are depicted

ABSTRACT

In oil palm there are three fruit forms viz. dura, tenera and pisifera. The commercial planting material is tenera produced by crossing dura and pisifera (D X P). Dura has thick shell and less economic part, where as pisifera is an abortic, female sterile type and cannot be reproduced in the normal ways. When tenera is selfed, segregation takes place in the monogenic Mendelian ratio; 1 dura: 2 tenera: 1 pisifera. Since all these palm types are morphologically alike, they can be confirmed only after fruiting, and verifying the internal fruit morphology. Fruiting in pisifera is highly erratic and often prolonged to several years. Proper technique in identifying these palms has been puzzling the breeder all over. Hence, a shell thickness marker is very important for early identification of the oil palm varieties.

An attempt has been taken to screen PCR primers and select the probable primers linked to the shell thickness in the present study. ‘Bulk segregation analysis’ approach was adopted for the study and DNA isolation was carried out from 25 dura and 25 pisifera palms. All the palms were developed from same tenera x tenera crosses. DNA from all the 25 duras and 25 pisiferas were pooled separately. Two pooled DNA samples were subjected to RAPD analysis with 50 random primers using the standard RAPD protocol. The amplified samples were electrophoresed and documented.

Both the pooled samples showed same banding pattern with all the primers, except 10 primers showing differences. Since the genetic configuration of the pooled dura DNA was likely to be same as that of the pisifera pooled DNA, the primers showing difference in banding pattern were the putative primers linked to shell thickness. All the 10 primers would be used for amplification of individual dura and pisifera DNA for confirmation of shell thickness marker.

Pedigree method of plant breeding is defined as a method of breeding in which individual plants are selected in the segregating generations from a cross on the basis of their desirability judged individually and on the basis of a pedigree record. This has been the most widely used method of plant breeding in all the self-pollinated crops and still continues to be so. This method has been first described by H. H. Lowe in 1927. This is the most widely used method to handle segregating generations following crosses between two parents to develop new cultivars combining desirable traits from both the parents. In this method, superior types are selected in successive segregating generations and a record is maintained of all parent-progeny relationships. The records help the breeder to advance only progeny lines with plants that exhibit genes for the desired traits. Selection begins in F2 generation where individual plants are selected which in judgment of breeder will produce the best progeny in F5/F6 when the selection is finally concluded. In F3 and F4 generations, many loci will have become homozygous and family characteristics begin to appear. By F5/F6 generation, most families are expected to be homozygous and uniform and hence selection within such families is no longer effective. 

Bulk population method of breeding is defined as the growing of genetically diverse populations of self-pollinated crops in a bulk plot with or without mass selection, followed by single plant selection. It is applicable to self-pollinated crops and not applied to cross-pollinated crops. Bulk population breeding is a strategy of crop improvement in which natural selection effect is solicited more directly in the early generations of the procedure by delaying stringent artificial selection until later generations. The Swede, H. Nilsson-Ehle, developed the procedure. H.V Harlan and colleagues provided additional theoretical foundation for this method through their work in barley breeding in 1940s. As proposed by Harlan and colleagues, the bulk method entails yield testing of the F2 bulk progenies from crosses and discarding whole crosses based on yield performance. In other words, the primary objective is to stratify crosses for selection of parents based on yield values. The current application of the bulk method has a different objective.

About 80% of the world population live in developing countries and are dependent on agriculture. Agricultural products, just after harvesting, are dried to the safe moisture level. Open solar drying for drying agricultural products is being practiced since ages throughout the world. Due to its several drawbacks as danger of (dust, rain, ultra-violet rays, birds, animals etc.), advance technique, i.e. greenhouse drying, is being adopted for drying crops to reduce the drying time and increase the quality of the food products.

Drying involves a heat and mass transfer phenomenon in which heat energy supplied to the product surface is utilized in two ways: (i) to increase the product surface temperature in the form of sensible heat and (ii) to vaporize the moisture present in product through the provision of the latent heat of vaporization. The removal of moisture from the interior of the product takes place due to induced vapour pressure difference between the product and surrounding medium. The moisture from the interior diffuses to the product surface to replenish the evaporated surrounding moisture.

The working principle of greenhouse drying is in which the product is placed in trays receiving the solar radiations through the plastic cover and moisture is removed by natural convection or forced convection.

Greenhouse drying are being adopted to reduce the losses and to increase the quality of the dried products. Solar energy is the most promising power source of energy for drying of agricultural products. Most of the farmers adopt open sun drying because it is abundant and inexpensive. But the open sun dried products are also subjected to remarkable losses due to environment. Losses of fruits and vegetables are estimated to be 30%-40% during drying under open sunlight. The post-harvest losses can be reduced by adopting advanced means of drying, i.e. greenhouse drying. The greenhouse dryer can be operated in natural and forced mode as required. Studies reveal that the greenhouse dried products are of superior quality and better colour retention as compared to open sun drying.

Single seed descent (SSD) method of breeding is applicable to self-pollinated crops. The method of single seed descent (SSD) was born out of a need to speed up the breeding programme by rapidly inbreeding a population prior to initiating individual plant selection and evaluation while reducing a loss of genotypes during the segregating generations. SSD procedure is based on advancing generations through single seed from each plant in each generation. This separates the inbreeding phase from the selection phase and the population reaches F6 generation faster. This procedure carries forward maximum number of F2 plants to a stage near homozygosity, i.e. F6. It was first proposed by C. H. Goulden in 1941 when he obtained the F6 generation in two years by reducing the number of generations grown from a plant to one or two while conducting multiple plantings per year using greenhouse and off-season planting. H. W. Johnson and R. L. Bernard described the procedure of harvesting a single seed per plant for soybean in 1962. However, it was C.A. Brim who, in 1966, provided a formal description of the procedure of single seed descent, calling it a modified pedigree method.

ABSTRACT

Of the several PCR techniques developed during the last two decades, random amplified polymorphic DNA (RAPD) offers a simple and economical means of genotype characterization. The information obtained through RAPD characterization is extensively used for the identification of genotypes, screening of duplicates, assessing genetic diversity and monitoring the genetic stability of conserved germplasm. The present study is a report on the DNA fingerprinting of P. nigrum and P. longum cultivars. Fourteen land races and three advanced cultivars of P. nigrum and eleven land races and one advanced cultivar of P.longum were used in the present study. Forty decamer primers from Operon Tech were screened using two representative genomic DNA samples of black pepper. Of these, 10 primers that yielded clear and dominant band patterns were selected for the final analysis of the 29 accessions. These generated 119 amplification products. The total number of markers per primer varied with respect to both P. nigrum and P. longum. Cultivar specific single bands were obtained for a few land races and accessions of both the Piper species.